Gene annotation
Transcriptome id Sobic.003G341300.1
Synonym Sb03g038530
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XNW7
Pfam PF04187 PF11891
Panther DB PTHR31620 PTHR31620:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G56140 : Protein of unknown function (DUF399 and DUF3411)
RAP-DB (Rice) LOC_Os01g61120.1 : expressed protein
MaizeGDB (Corn) Zm00025a027105 , Zm00025a027023 , Zm00025a037783
Brachypodium PNT71063 , KQK10387
Barley HORVU1Hr1G070330.5 , HORVU3Hr1G088220.20 , HORVU3Hr1G088220.6 , HORVU3Hr1G088220.15 , HORVU3Hr1G088220.14 , HORVU1Hr1G070330.8 , HORVU3Hr1G088220.18 , HORVU1Hr1G070330.2 , HORVU1Hr1G070330.3 , HORVU3Hr1G088220.16 , HORVU1Hr1G070330.6 , HORVU1Hr1G070330.7 , HORVU3Hr1G088220.13 , HORVU3Hr1G088220.10 , HORVU1Hr1G070330.4 , HORVU1Hr1G070330.10 , HORVU1Hr1G070330.11 , HORVU1Hr1G070330.12 , HORVU1Hr1G070330.13 , HORVU1Hr1G070330.14 , HORVU1Hr1G070330.15 , HORVU5Hr1G020100.1 , HORVU5Hr1G020100.2 , HORVU5Hr1G020100.3 , HORVU3Hr1G088220.11 , HORVU3Hr1G088220.9 , HORVU3Hr1G088220.8 , HORVU3Hr1G088220.2 , HORVU3Hr1G088220.4 , HORVU3Hr1G088220.7 , HORVU3Hr1G088220.12 , HORVU1Hr1G070330.1
Wheat TraesCS3D02G341400 , TraesCS3B02G379700 , TraesCS3B02G379700 , TraesCS3A02G347800 , TraesCS1B02G307600 , TraesCS1A02G298100 , TraesCS1D02G293100
Populus PNT23294 , PNT23295 , PNT23296


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cDNA sequences
Sobic.003G341300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
2 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
3 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
4 Sobic.003G409700 rieske domain containing protein, expressed -
5 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
6 Sobic.002G162400 potassium channel protein, putative, expressed K05389: potassium channel subfamily K, other eukaryote
7 Sobic.001G077300 thioredoxin, putative, expressed -
8 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
9 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
11 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
13 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
14 Sobic.009G133700 expressed protein -
15 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
16 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
17 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
18 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
19 Sobic.001G536700 expressed protein -
20 Sobic.001G207800 integral membrane protein, putative, expressed -


Gene co-expression network
sample Sobic003G341300 Sobic003G341300 Sobic001G180200 Sobic001G180200 Sobic003G341300--Sobic001G180200 Sobic007G157300 Sobic007G157300 Sobic003G341300--Sobic007G157300 Sobic001G283100 Sobic001G283100 Sobic003G341300--Sobic001G283100 Sobic003G409700 Sobic003G409700 Sobic003G341300--Sobic003G409700 Sobic006G235400 Sobic006G235400 Sobic003G341300--Sobic006G235400 Sobic002G162400 Sobic002G162400 Sobic003G341300--Sobic002G162400 Sobic001G077300 Sobic001G077300 Sobic003G341300--Sobic001G077300 Sobic006G090100 Sobic006G090100 Sobic003G341300--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic003G341300--Sobic003G094100 Sobic001G180200--Sobic003G341300 Sobic002G206300 Sobic002G206300 Sobic001G180200--Sobic002G206300 Sobic007G135800 Sobic007G135800 Sobic001G180200--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic001G180200--Sobic009G038701 Sobic009G207900 Sobic009G207900 Sobic001G180200--Sobic009G207900 Sobic001G180200--Sobic003G094100 Sobic001G504400 Sobic001G504400 Sobic001G180200--Sobic001G504400 Sobic001G263100 Sobic001G263100 Sobic001G180200--Sobic001G263100 Sobic001G180200--Sobic002G162400 Sobic009G133700 Sobic009G133700 Sobic007G157300--Sobic009G133700 Sobic007G157300--Sobic003G341300 Sobic007G157300--Sobic003G094100 Sobic007G157300--Sobic001G283100 Sobic007G108900 Sobic007G108900 Sobic007G157300--Sobic007G108900 Sobic007G157300--Sobic007G135800 Sobic001G393300 Sobic001G393300 Sobic007G157300--Sobic001G393300 Sobic001G509200 Sobic001G509200 Sobic007G157300--Sobic001G509200 Sobic007G157300--Sobic003G409700 Sobic001G283100--Sobic006G090100 Sobic001G283100--Sobic003G094100 Sobic001G207800 Sobic001G207800 Sobic001G283100--Sobic001G207800 Sobic001G283100--Sobic003G341300 Sobic001G283100--Sobic007G108900 Sobic001G283100--Sobic001G393300 Sobic001G283100--Sobic007G157300 Sobic001G283100--Sobic001G509200 Sobic002G382700 Sobic002G382700 Sobic001G283100--Sobic002G382700 Sobic003G409700--Sobic003G341300 Sobic003G409700--Sobic009G133700 Sobic003G409700--Sobic007G135800 Sobic003G409700--Sobic006G235400 Sobic006G161500 Sobic006G161500 Sobic003G409700--Sobic006G161500 Sobic003G380200 Sobic003G380200 Sobic003G409700--Sobic003G380200 Sobic004G128900 Sobic004G128900 Sobic003G409700--Sobic004G128900 Sobic003G409700--Sobic007G157300 Sobic003G228300 Sobic003G228300 Sobic003G409700--Sobic003G228300 Sobic010G231300 Sobic010G231300 Sobic006G235400--Sobic010G231300 Sobic006G235400--Sobic001G077300 Sobic006G235400--Sobic004G128900 Sobic006G235400--Sobic003G341300 Sobic006G235400--Sobic003G409700 Sobic008G129900 Sobic008G129900 Sobic006G235400--Sobic008G129900 Sobic006G235400--Sobic006G161500 Sobic006G235400--Sobic003G380200 Sobic006G235400--Sobic001G180200 Sobic002G162400--Sobic003G341300 Sobic002G162400--Sobic001G263100 Sobic002G162400--Sobic001G180200 Sobic002G162400--Sobic002G206300 Sobic002G162400--Sobic010G231300 Sobic002G162400--Sobic006G235400 Sobic002G162400--Sobic001G077300 Sobic001G258200 Sobic001G258200 Sobic002G162400--Sobic001G258200 Sobic002G162400--Sobic008G129900 Sobic009G073900 Sobic009G073900 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic001G077300--Sobic006G235400 Sobic004G127800 Sobic004G127800 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic001G077300--Sobic003G341300 Sobic006G212800 Sobic006G212800 Sobic001G077300--Sobic006G212800 Sobic003G003450 Sobic003G003450 Sobic001G077300--Sobic003G003450 Sobic006G090100--Sobic001G207800 Sobic006G090100--Sobic001G283100 Sobic006G090100--Sobic001G077300 Sobic006G090100--Sobic001G509200 Sobic006G090100--Sobic009G073900 Sobic006G090100--Sobic002G382700 Sobic006G090100--Sobic003G341300 Sobic001G046000 Sobic001G046000 Sobic006G090100--Sobic001G046000 Sobic002G081400 Sobic002G081400 Sobic006G090100--Sobic002G081400 Sobic003G094100--Sobic007G108900 Sobic003G094100--Sobic001G509200 Sobic003G094100--Sobic007G135800 Sobic003G094100--Sobic001G393300 Sobic003G094100--Sobic001G283100 Sobic003G094100--Sobic007G157300 Sobic004G103300 Sobic004G103300 Sobic003G094100--Sobic004G103300 Sobic003G094100--Sobic001G180200 Sobic002G298800 Sobic002G298800 Sobic003G094100--Sobic002G298800
Octagon: transcription factors


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