Gene annotation
| Transcriptome id | Sobic.007G135800.1 |
|---|---|
| Synonym | Sb07g021160 |
| Functional annotation | ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed |
| UniProt | C5YL74 |
| Pfam | PF02617 |
| Panther DB | PTHR33473 PTHR33473:SF4 |
| NCBI CDD | - |
| KEGG Orthology | K06891; ATP-dependent Clp protease adaptor protein ClpS |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G68660 : Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g33540.1 : ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a005948 , Zm00025a031135 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.007G135800 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G509200 | "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed | K11159: carotenoid cleavage oxygenase |
| 2 | Sobic.003G094100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 3 | Sobic.001G393300 | HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed | - |
| 4 | Sobic.001G180200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed | K13348: protein Mpv17 |
| 5 | Sobic.004G103300 | Complex I intermediate-associated protein 30 domain containing protein, putative, expressed | - |
| 6 | Sobic.006G213700 | oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed | K13237: peroxisomal 2,4-dienoyl-CoA reductase |
| 7 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 8 | Sobic.003G409700 | rieske domain containing protein, expressed | - |
| 9 | Sobic.003G341300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 10 | Sobic.003G380200 | SNARE associated Golgi protein, putative, expressed | - |
| 11 | Sobic.001G368600 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 12 | Sobic.001G499100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC-2 type transporter domain containing protein, expressed | - |
| 13 | Sobic.007G157300 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 14 | Sobic.007G108900 | APE1, putative, expressed | - |
| 15 | Sobic.005G028800 | astaxanthin synthase KC28, putative, expressed | - |
| 16 | Sobic.009G073900 | thioredoxin, putative, expressed | - |
| 17 | Sobic.002G298800 | PAP fibrillin family domain containing protein, expressed | - |
| 18 | Sobic.001G077300 | thioredoxin, putative, expressed | - |
| 19 | Sobic.006G235400 | ELMO/CED-12 family protein, putative, expressed | K08869: ADCK, aarF domain-containing kinase |
| 20 | Sobic.002G072500 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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