Gene annotation
Transcriptome id Sobic.003G380200.1
Synonym Sb03g041990
Functional annotation SNARE associated Golgi protein, putative, expressed
UniProt C5XEM5
Pfam PF09335
Panther DB PTHR12677 PTHR12677:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G22850 : SNARE associated Golgi protein family
RAP-DB (Rice) LOC_Os01g66170.1 : SNARE associated Golgi protein, putative, expressed
MaizeGDB (Corn) Zm00025a039487 , Zm00025a026535
Brachypodium KQK10936
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G380200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
2 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
3 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
4 Sobic.003G304300 expressed protein -
5 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
6 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.007G087100 pentatricopeptide, putative, expressed -
8 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
9 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
10 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
11 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
12 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
13 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
14 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
16 Sobic.003G409700 rieske domain containing protein, expressed -
17 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
18 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
19 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
20 Sobic.001G077300 thioredoxin, putative, expressed -


Gene co-expression network
sample Sobic003G380200 Sobic003G380200 Sobic006G191500 Sobic006G191500 Sobic003G380200--Sobic006G191500 Sobic003G186800 Sobic003G186800 Sobic003G380200--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic003G380200--Sobic010G100900 Sobic003G304300 Sobic003G304300 Sobic003G380200--Sobic003G304300 Sobic004G267700 Sobic004G267700 Sobic003G380200--Sobic004G267700 Sobic001G485100 Sobic001G485100 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic002G161400 Sobic002G161400 Sobic003G380200--Sobic002G161400 Sobic004G268400 Sobic004G268400 Sobic003G380200--Sobic004G268400 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic006G191500--Sobic003G304300 Sobic004G128900 Sobic004G128900 Sobic006G191500--Sobic004G128900 Sobic004G344600 Sobic004G344600 Sobic006G191500--Sobic004G344600 Sobic006G191500--Sobic003G186800 Sobic006G191500--Sobic010G100900 Sobic001G046000 Sobic001G046000 Sobic006G191500--Sobic001G046000 Sobic003G186800--Sobic003G380200 Sobic003G186800--Sobic003G304300 Sobic009G225600 Sobic009G225600 Sobic003G186800--Sobic009G225600 Sobic003G186800--Sobic006G191500 Sobic003G186800--Sobic001G485100 Sobic010G101000 Sobic010G101000 Sobic003G186800--Sobic010G101000 Sobic003G186800--Sobic004G268400 Sobic002G047400 Sobic002G047400 Sobic003G186800--Sobic002G047400 Sobic003G186800--Sobic004G267700 Sobic002G351200 Sobic002G351200 Sobic010G100900--Sobic002G351200 Sobic010G100900--Sobic003G380200 Sobic002G132400 Sobic002G132400 Sobic010G100900--Sobic002G132400 Sobic010G100900--Sobic004G268400 Sobic010G100900--Sobic003G304300 Sobic010G100900--Sobic004G267700 Sobic004G271600 Sobic004G271600 Sobic010G100900--Sobic004G271600 Sobic002G356900 Sobic002G356900 Sobic010G100900--Sobic002G356900 Sobic010G100900--Sobic004G128900 Sobic003G304300--Sobic004G267700 Sobic003G304300--Sobic006G191500 Sobic003G304300--Sobic002G351200 Sobic003G304300--Sobic002G161400 Sobic003G304300--Sobic004G344600 Sobic001G112900 Sobic001G112900 Sobic003G304300--Sobic001G112900 Sobic003G304300--Sobic003G186800 Sobic003G304300--Sobic003G380200 Sobic003G304300--Sobic004G268400 Sobic004G267700--Sobic004G268400 Sobic004G267700--Sobic003G304300 Sobic004G267700--Sobic010G101000 Sobic007G016600 Sobic007G016600 Sobic004G267700--Sobic007G016600 Sobic004G267700--Sobic003G380200 Sobic004G267700--Sobic002G351200 Sobic001G018000 Sobic001G018000 Sobic004G267700--Sobic001G018000 Sobic004G267700--Sobic003G186800 Sobic004G267700--Sobic010G100900 Sobic001G485100--Sobic006G191500 Sobic001G485100--Sobic002G161400 Sobic001G485100--Sobic003G380200 Sobic001G485100--Sobic003G186800 Sobic001G485100--Sobic001G046000 Sobic001G331600 Sobic001G331600 Sobic001G485100--Sobic001G331600 Sobic003G228300 Sobic003G228300 Sobic001G485100--Sobic003G228300 Sobic001G485100--Sobic009G225600 Sobic001G485100--Sobic004G344600 Sobic007G087100--Sobic003G380200 Sobic009G073900 Sobic009G073900 Sobic007G087100--Sobic009G073900 Sobic009G170200 Sobic009G170200 Sobic007G087100--Sobic009G170200 Sobic001G077300 Sobic001G077300 Sobic007G087100--Sobic001G077300 Sobic007G087100--Sobic002G356900 Sobic006G232600 Sobic006G232600 Sobic007G087100--Sobic006G232600 Sobic009G103000 Sobic009G103000 Sobic007G087100--Sobic009G103000 Sobic003G003450 Sobic003G003450 Sobic007G087100--Sobic003G003450 Sobic007G135800 Sobic007G135800 Sobic007G087100--Sobic007G135800 Sobic002G161400--Sobic006G191500 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic002G161400--Sobic003G304300 Sobic002G161400--Sobic001G485100 Sobic004G153900 Sobic004G153900 Sobic002G161400--Sobic004G153900 Sobic003G339200 Sobic003G339200 Sobic002G161400--Sobic003G339200 Sobic002G161400--Sobic003G380200 Sobic002G161400--Sobic001G112900 Sobic004G268400--Sobic004G267700 Sobic004G268400--Sobic007G016600 Sobic004G268400--Sobic001G018000 Sobic004G268400--Sobic002G351200 Sobic004G268400--Sobic003G304300 Sobic004G268400--Sobic003G186800 Sobic004G268400--Sobic010G100900 Sobic004G268400--Sobic010G101000 Sobic004G268400--Sobic003G380200
Octagon: transcription factors


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