Gene annotation
| Transcriptome id | Sobic.001G509200.1 |
|---|---|
| Synonym | Sb01g047540, CCD1, ATCCD1, ATNCED1, NCED1 |
| Functional annotation | "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1" (PubMedID : 29862293) carotenoid cleavage dioxygenase, putative, expressed |
| UniProt | A0A1Z5SBG6 |
| Pfam | PF03055 |
| Panther DB | PTHR10543 PTHR10543:SF37 |
| NCBI CDD | KOG1285; Beta, beta-carotene 15,15'-dioxygenase and related enzymes |
| KEGG Orthology | K11159; carotenoid cleavage oxygenase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G63520 : carotenoid cleavage dioxygenase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os12g44310.2 : carotenoid cleavage dioxygenase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a053268 , Zm00025a053272 , Zm00025a053270 , Zm00025a053394 |
| Brachypodium | PNT62255 , PNT62254 |
| Barley | HORVU5Hr1G000320.10 , HORVU5Hr1G000320.11 , HORVU5Hr1G000320.12 , HORVU5Hr1G000320.14 , HORVU5Hr1G000320.15 , HORVU4Hr1G006300.2 , HORVU4Hr1G006300.1 , HORVU5Hr1G000320.13 , HORVU5Hr1G000320.8 , HORVU5Hr1G000320.9 , HORVU5Hr1G000320.2 , HORVU5Hr1G000320.3 , HORVU5Hr1G000320.1 , HORVU5Hr1G000320.6 , HORVU5Hr1G000320.7 , HORVU5Hr1G000320.4 , HORVU5Hr1G000320.5 |
| Wheat | TraesCS5A02G001500 , TraesCS5A02G001500 , TraesCS5B02G001800 , TraesCS5A02G002200 , TraesCS5A02G002200 , TraesCS5A02G002400 , TraesCS5A02G002400 , TraesCS5D02G002900 , TraesCS5D02G001900 , TraesCS5D02G001900 , TraesCS5D02G002800 , TraesCS5B02G002600 , TraesCS5B02G002600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G135800 | ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed | K06891: ATP-dependent Clp protease adaptor protein ClpS |
| 2 | Sobic.004G103300 | Complex I intermediate-associated protein 30 domain containing protein, putative, expressed | - |
| 3 | Sobic.001G393300 | HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed | - |
| 4 | Sobic.007G108900 | APE1, putative, expressed | - |
| 5 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 6 | Sobic.003G094100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 7 | Sobic.006G213700 | oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed | K13237: peroxisomal 2,4-dienoyl-CoA reductase |
| 8 | Sobic.006G090100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | K09919: uncharacterized protein |
| 9 | Sobic.009G073900 | thioredoxin, putative, expressed | - |
| 10 | Sobic.007G124500 | methyltransferase, putative, expressed | - |
| 11 | Sobic.005G028800 | astaxanthin synthase KC28, putative, expressed | - |
| 12 | Sobic.001G207800 | integral membrane protein, putative, expressed | - |
| 13 | Sobic.001G015200 | Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed | - |
| 14 | Sobic.003G003450 | - | K01177: beta-amylase |
| 15 | Sobic.002G072500 | expressed protein | - |
| 16 | Sobic.001G499100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC-2 type transporter domain containing protein, expressed | - |
| 17 | Sobic.007G157300 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 18 | Sobic.001G283100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed | - |
| 19 | Sobic.003G380200 | SNARE associated Golgi protein, putative, expressed | - |
| 20 | Sobic.002G047400 | "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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