Gene annotation
Transcriptome id Sobic.003G003450.1
Synonym -
Functional annotation -
UniProt A0A1W0VV93
Pfam PF00300 PF01373
Panther DB PTHR31352 PTHR31352:SF7
NCBI CDD KOG0235; Phosphoglycerate mutase
KEGG Orthology K01177; beta-amylase
Gene Ontology GO:0016161; beta-amylase activity GO:0000272polysaccharide catabolic process


Orthologs (automatic annotation)
TAIR AT4G17090 : chloroplast beta-amylase
RAP-DB (Rice) LOC_Os01g13550.1 : beta-amylase, putative, expressed
MaizeGDB (Corn) Zm00025a036008 , Zm00025a022789
Brachypodium KQK03491
Barley HORVU3Hr1G032160.2
Wheat TraesCS3A02G159900 , TraesCS3B02G190600 , TraesCS3D02G167100 , TraesCS3D02G167100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G073900 thioredoxin, putative, expressed -
2 Sobic.001G077300 thioredoxin, putative, expressed -
3 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
4 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
5 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
6 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
7 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
8 Sobic.007G087100 pentatricopeptide, putative, expressed -
9 Sobic.001G207800 integral membrane protein, putative, expressed -
10 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.007G108900 APE1, putative, expressed -
12 Sobic.009G103000 ubiquitin family protein, putative, expressed -
13 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
14 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
15 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
16 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
17 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
18 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
19 Sobic.001G536700 expressed protein -
20 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -


Gene co-expression network
sample Sobic003G003450 Sobic003G003450 Sobic009G073900 Sobic009G073900 Sobic003G003450--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic003G003450--Sobic001G077300 Sobic001G509200 Sobic001G509200 Sobic003G003450--Sobic001G509200 Sobic006G213700 Sobic006G213700 Sobic003G003450--Sobic006G213700 Sobic002G081400 Sobic002G081400 Sobic003G003450--Sobic002G081400 Sobic006G232600 Sobic006G232600 Sobic003G003450--Sobic006G232600 Sobic006G090100 Sobic006G090100 Sobic003G003450--Sobic006G090100 Sobic007G087100 Sobic007G087100 Sobic003G003450--Sobic007G087100 Sobic001G207800 Sobic001G207800 Sobic003G003450--Sobic001G207800 Sobic009G073900--Sobic001G077300 Sobic009G073900--Sobic003G003450 Sobic009G073900--Sobic006G090100 Sobic009G073900--Sobic001G509200 Sobic009G073900--Sobic007G087100 Sobic003G094100 Sobic003G094100 Sobic009G073900--Sobic003G094100 Sobic009G073900--Sobic002G081400 Sobic007G135800 Sobic007G135800 Sobic009G073900--Sobic007G135800 Sobic009G073900--Sobic006G213700 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic006G235400 Sobic006G235400 Sobic001G077300--Sobic006G235400 Sobic004G127800 Sobic004G127800 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic003G341300 Sobic003G341300 Sobic001G077300--Sobic003G341300 Sobic006G212800 Sobic006G212800 Sobic001G077300--Sobic006G212800 Sobic001G077300--Sobic003G003450 Sobic001G509200--Sobic007G135800 Sobic004G103300 Sobic004G103300 Sobic001G509200--Sobic004G103300 Sobic001G393300 Sobic001G393300 Sobic001G509200--Sobic001G393300 Sobic007G108900 Sobic007G108900 Sobic001G509200--Sobic007G108900 Sobic007G166300 Sobic007G166300 Sobic001G509200--Sobic007G166300 Sobic001G509200--Sobic003G094100 Sobic001G509200--Sobic006G213700 Sobic001G509200--Sobic006G090100 Sobic001G509200--Sobic009G073900 Sobic006G213700--Sobic001G509200 Sobic006G213700--Sobic007G135800 Sobic003G380200 Sobic003G380200 Sobic006G213700--Sobic003G380200 Sobic006G213700--Sobic003G003450 Sobic006G213700--Sobic009G073900 Sobic001G499100 Sobic001G499100 Sobic006G213700--Sobic001G499100 Sobic006G213700--Sobic003G094100 Sobic003G409700 Sobic003G409700 Sobic006G213700--Sobic003G409700 Sobic006G213700--Sobic006G090100 Sobic004G317700 Sobic004G317700 Sobic002G081400--Sobic004G317700 Sobic004G271600 Sobic004G271600 Sobic002G081400--Sobic004G271600 Sobic002G081400--Sobic009G073900 Sobic002G081400--Sobic001G077300 Sobic002G081400--Sobic003G003450 Sobic002G081400--Sobic006G090100 Sobic002G081400--Sobic001G509200 Sobic007G124500 Sobic007G124500 Sobic002G081400--Sobic007G124500 Sobic009G170200 Sobic009G170200 Sobic002G081400--Sobic009G170200 Sobic006G232600--Sobic009G170200 Sobic006G232600--Sobic007G087100 Sobic006G232600--Sobic003G003450 Sobic001G378100 Sobic001G378100 Sobic006G232600--Sobic001G378100 Sobic006G232600--Sobic009G073900 Sobic006G233700 Sobic006G233700 Sobic006G232600--Sobic006G233700 Sobic009G103000 Sobic009G103000 Sobic006G232600--Sobic009G103000 Sobic006G232600--Sobic001G077300 Sobic006G232600--Sobic002G081400 Sobic006G090100--Sobic001G207800 Sobic001G283100 Sobic001G283100 Sobic006G090100--Sobic001G283100 Sobic006G090100--Sobic001G077300 Sobic006G090100--Sobic001G509200 Sobic006G090100--Sobic009G073900 Sobic002G382700 Sobic002G382700 Sobic006G090100--Sobic002G382700 Sobic006G090100--Sobic003G341300 Sobic001G046000 Sobic001G046000 Sobic006G090100--Sobic001G046000 Sobic006G090100--Sobic002G081400 Sobic007G087100--Sobic003G380200 Sobic007G087100--Sobic009G073900 Sobic007G087100--Sobic009G170200 Sobic007G087100--Sobic001G077300 Sobic002G356900 Sobic002G356900 Sobic007G087100--Sobic002G356900 Sobic007G087100--Sobic006G232600 Sobic007G087100--Sobic009G103000 Sobic007G087100--Sobic003G003450 Sobic007G087100--Sobic007G135800 Sobic001G207800--Sobic006G090100 Sobic001G207800--Sobic001G283100 Sobic001G207800--Sobic002G382700 Sobic001G207800--Sobic001G509200 Sobic001G207800--Sobic001G077300 Sobic001G207800--Sobic007G108900 Sobic001G207800--Sobic009G073900 Sobic001G207800--Sobic003G341300 Sobic007G157300 Sobic007G157300 Sobic001G207800--Sobic007G157300
Octagon: transcription factors


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