Gene annotation
| Transcriptome id | Sobic.007G157300.1 |
|---|---|
| Synonym | Sb07g023080 |
| Functional annotation | NAD dependent epimerase/dehydratase family protein, putative, expressed |
| UniProt | C5YMB7 |
| Pfam | PF13460 |
| Panther DB | PTHR15020 PTHR15020:SF11 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G34460 : NAD(P)-binding Rossmann-fold superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os06g25439.1 : NAD dependent epimerase/dehydratase family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a005429 |
| Brachypodium | KQJ84683 |
| Barley | HORVU7Hr1G083360.1 |
| Wheat | TraesCS7D02G346000 , TraesCS7A02G338800 , TraesCS7B02G250100 |
| Populus | - |
JBrowse
| Sobic.007G157300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G133700 | expressed protein | - |
| 2 | Sobic.003G341300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 3 | Sobic.003G094100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 4 | Sobic.001G283100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed | - |
| 5 | Sobic.007G108900 | APE1, putative, expressed | - |
| 6 | Sobic.007G135800 | ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed | K06891: ATP-dependent Clp protease adaptor protein ClpS |
| 7 | Sobic.001G393300 | HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed | - |
| 8 | Sobic.001G509200 | "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed | K11159: carotenoid cleavage oxygenase |
| 9 | Sobic.003G409700 | rieske domain containing protein, expressed | - |
| 10 | Sobic.006G090100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | K09919: uncharacterized protein |
| 11 | Sobic.001G207800 | integral membrane protein, putative, expressed | - |
| 12 | Sobic.001G180200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed | K13348: protein Mpv17 |
| 13 | Sobic.001G077300 | thioredoxin, putative, expressed | - |
| 14 | Sobic.001G258200 | Ser/Thr protein phosphatase family protein, putative, expressed | - |
| 15 | Sobic.009G073900 | thioredoxin, putative, expressed | - |
| 16 | Sobic.003G005000 | expressed protein | - |
| 17 | Sobic.001G536700 | expressed protein | - |
| 18 | Sobic.004G103300 | Complex I intermediate-associated protein 30 domain containing protein, putative, expressed | - |
| 19 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 20 | Sobic.003G003450 | - | K01177: beta-amylase |
Gene co-expression network
Octagon: transcription factors
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