Gene annotation
Transcriptome id Sobic.001G207800.1
Synonym Sb01g018390
Functional annotation integral membrane protein, putative, expressed
UniProt C5WXC6
Pfam PF00892
Panther DB PTHR22911 PTHR22911:SF60
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT3G02690 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os10g35140.1 : integral membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a006490
Brachypodium KQJ97266 , KQJ97267 , KQJ97265 , KQJ97268
Barley HORVU1Hr1G043730.16 , HORVU1Hr1G043730.17 , HORVU1Hr1G043730.14 , HORVU1Hr1G043730.15 , HORVU1Hr1G043730.12 , HORVU1Hr1G043730.13 , HORVU1Hr1G043730.10 , HORVU1Hr1G043730.11 , HORVU1Hr1G043730.18 , HORVU1Hr1G043730.19 , HORVU1Hr1G043730.4 , HORVU1Hr1G043730.5 , HORVU1Hr1G043730.6 , HORVU1Hr1G043730.7 , HORVU1Hr1G043730.1 , HORVU1Hr1G043730.2 , HORVU1Hr1G043730.3 , HORVU1Hr1G043730.8 , HORVU1Hr1G043730.9 , HORVU1Hr1G043730.27 , HORVU1Hr1G043730.26 , HORVU1Hr1G043730.25 , HORVU1Hr1G043730.24 , HORVU1Hr1G043730.23 , HORVU1Hr1G043730.22 , HORVU1Hr1G043730.21 , HORVU1Hr1G043730.20
Wheat TraesCS1B02G181600 , TraesCS1A02G164700 , TraesCS1D02G161800
Populus -


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cDNA sequences
Sobic.001G207800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
2 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
3 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
4 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
5 Sobic.001G077300 thioredoxin, putative, expressed -
6 Sobic.007G108900 APE1, putative, expressed -
7 Sobic.009G073900 thioredoxin, putative, expressed -
8 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
10 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G003450 - K01177: beta-amylase
12 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
13 Sobic.006G221000 starch synthase 3(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@soluble starch synthase 3, chloroplast precursor, putative, expressed -
14 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
15 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
16 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
17 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
18 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
20 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G207800 Sobic001G207800 Sobic006G090100 Sobic006G090100 Sobic001G207800--Sobic006G090100 Sobic001G283100 Sobic001G283100 Sobic001G207800--Sobic001G283100 Sobic002G382700 Sobic002G382700 Sobic001G207800--Sobic002G382700 Sobic001G509200 Sobic001G509200 Sobic001G207800--Sobic001G509200 Sobic001G077300 Sobic001G077300 Sobic001G207800--Sobic001G077300 Sobic007G108900 Sobic007G108900 Sobic001G207800--Sobic007G108900 Sobic009G073900 Sobic009G073900 Sobic001G207800--Sobic009G073900 Sobic003G341300 Sobic003G341300 Sobic001G207800--Sobic003G341300 Sobic007G157300 Sobic007G157300 Sobic001G207800--Sobic007G157300 Sobic006G090100--Sobic001G207800 Sobic006G090100--Sobic001G283100 Sobic006G090100--Sobic001G077300 Sobic006G090100--Sobic001G509200 Sobic006G090100--Sobic009G073900 Sobic006G090100--Sobic002G382700 Sobic006G090100--Sobic003G341300 Sobic001G046000 Sobic001G046000 Sobic006G090100--Sobic001G046000 Sobic002G081400 Sobic002G081400 Sobic006G090100--Sobic002G081400 Sobic001G283100--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic001G283100--Sobic003G094100 Sobic001G283100--Sobic001G207800 Sobic001G283100--Sobic003G341300 Sobic001G283100--Sobic007G108900 Sobic001G393300 Sobic001G393300 Sobic001G283100--Sobic001G393300 Sobic001G283100--Sobic007G157300 Sobic001G283100--Sobic001G509200 Sobic001G283100--Sobic002G382700 Sobic002G382700--Sobic001G207800 Sobic001G258200 Sobic001G258200 Sobic002G382700--Sobic001G258200 Sobic002G382700--Sobic006G090100 Sobic002G382700--Sobic003G341300 Sobic002G382700--Sobic001G283100 Sobic007G058100 Sobic007G058100 Sobic002G382700--Sobic007G058100 Sobic002G382700--Sobic001G077300 Sobic002G162400 Sobic002G162400 Sobic002G382700--Sobic002G162400 Sobic007G227100 Sobic007G227100 Sobic002G382700--Sobic007G227100 Sobic007G135800 Sobic007G135800 Sobic001G509200--Sobic007G135800 Sobic004G103300 Sobic004G103300 Sobic001G509200--Sobic004G103300 Sobic001G509200--Sobic001G393300 Sobic001G509200--Sobic007G108900 Sobic007G166300 Sobic007G166300 Sobic001G509200--Sobic007G166300 Sobic001G509200--Sobic003G094100 Sobic006G213700 Sobic006G213700 Sobic001G509200--Sobic006G213700 Sobic001G509200--Sobic006G090100 Sobic001G509200--Sobic009G073900 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic006G235400 Sobic006G235400 Sobic001G077300--Sobic006G235400 Sobic004G127800 Sobic004G127800 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic001G077300--Sobic003G341300 Sobic006G212800 Sobic006G212800 Sobic001G077300--Sobic006G212800 Sobic003G003450 Sobic003G003450 Sobic001G077300--Sobic003G003450 Sobic007G108900--Sobic003G094100 Sobic007G108900--Sobic001G509200 Sobic007G108900--Sobic004G103300 Sobic007G108900--Sobic001G393300 Sobic006G102000 Sobic006G102000 Sobic007G108900--Sobic006G102000 Sobic007G108900--Sobic001G283100 Sobic010G181300 Sobic010G181300 Sobic007G108900--Sobic010G181300 Sobic007G108900--Sobic007G166300 Sobic002G298800 Sobic002G298800 Sobic007G108900--Sobic002G298800 Sobic009G073900--Sobic001G077300 Sobic009G073900--Sobic003G003450 Sobic009G073900--Sobic006G090100 Sobic009G073900--Sobic001G509200 Sobic007G087100 Sobic007G087100 Sobic009G073900--Sobic007G087100 Sobic009G073900--Sobic003G094100 Sobic009G073900--Sobic002G081400 Sobic009G073900--Sobic007G135800 Sobic009G073900--Sobic006G213700 Sobic001G180200 Sobic001G180200 Sobic003G341300--Sobic001G180200 Sobic003G341300--Sobic007G157300 Sobic003G341300--Sobic001G283100 Sobic003G409700 Sobic003G409700 Sobic003G341300--Sobic003G409700 Sobic003G341300--Sobic006G235400 Sobic003G341300--Sobic002G162400 Sobic003G341300--Sobic001G077300 Sobic003G341300--Sobic006G090100 Sobic003G341300--Sobic003G094100 Sobic009G133700 Sobic009G133700 Sobic007G157300--Sobic009G133700 Sobic007G157300--Sobic003G341300 Sobic007G157300--Sobic003G094100 Sobic007G157300--Sobic001G283100 Sobic007G157300--Sobic007G108900 Sobic007G157300--Sobic007G135800 Sobic007G157300--Sobic001G393300 Sobic007G157300--Sobic001G509200 Sobic007G157300--Sobic003G409700
Octagon: transcription factors


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