Gene annotation
Transcriptome id Sobic.006G221000.1
Synonym Sb06g029050, ATSS3, SS3,
Functional annotation starch synthase 3 (PubMedID : 26465154)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
soluble starch synthase 3, chloroplast precursor, putative, expressed
UniProt B2Z9Y2 , A0A1B6PN98 , A5Y2U7
Pfam PF08323 PF16760
Panther DB PTHR12526 PTHR12526:SF341
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11720 : starch synthase 3
RAP-DB (Rice) LOC_Os04g53310.1 : soluble starch synthase 3, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a057063 , Zm00025a009713
Brachypodium KQJ84696
Barley HORVU0Hr1G005540.1 , HORVU0Hr1G005540.2 , HORVU2Hr1G106410.10 , HORVU2Hr1G106410.11 , HORVU2Hr1G106410.12 , HORVU2Hr1G106410.13 , HORVU0Hr1G005550.1 , HORVU2Hr1G106410.6 , HORVU2Hr1G106410.7 , HORVU2Hr1G106410.4 , HORVU2Hr1G106410.5 , HORVU2Hr1G106410.2 , HORVU2Hr1G106410.3 , HORVU2Hr1G106410.1 , HORVU2Hr1G106410.8 , HORVU2Hr1G106410.9
Wheat TraesCS2A02G468800 , TraesCS2A02G468800 , TraesCS2A02G468800 , TraesCS2B02G491700 , TraesCS2B02G491700 , TraesCS2D02G468900 , TraesCS2D02G468900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G108900 APE1, putative, expressed -
2 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
3 Sobic.001G207800 integral membrane protein, putative, expressed -
4 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
5 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
6 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
7 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -
8 Sobic.004G035900 expressed protein -
9 Sobic.003G003450 - K01177: beta-amylase
10 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
11 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
12 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
13 Sobic.003G166200 expressed protein -
14 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
15 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.005G062700 nifU, putative, expressed -
17 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G289500 kinase, pfkB family, putative, expressed -
19 Sobic.003G005000 expressed protein -
20 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic006G221000 Sobic006G221000 Sobic007G108900 Sobic007G108900 Sobic006G221000--Sobic007G108900 Sobic001G283100 Sobic001G283100 Sobic006G221000--Sobic001G283100 Sobic001G207800 Sobic001G207800 Sobic006G221000--Sobic001G207800 Sobic006G090100 Sobic006G090100 Sobic006G221000--Sobic006G090100 Sobic001G015200 Sobic001G015200 Sobic006G221000--Sobic001G015200 Sobic002G047400 Sobic002G047400 Sobic006G221000--Sobic002G047400 Sobic001G303200 Sobic001G303200 Sobic006G221000--Sobic001G303200 Sobic004G035900 Sobic004G035900 Sobic006G221000--Sobic004G035900 Sobic003G003450 Sobic003G003450 Sobic006G221000--Sobic003G003450 Sobic003G094100 Sobic003G094100 Sobic007G108900--Sobic003G094100 Sobic001G509200 Sobic001G509200 Sobic007G108900--Sobic001G509200 Sobic004G103300 Sobic004G103300 Sobic007G108900--Sobic004G103300 Sobic001G393300 Sobic001G393300 Sobic007G108900--Sobic001G393300 Sobic006G102000 Sobic006G102000 Sobic007G108900--Sobic006G102000 Sobic007G108900--Sobic001G283100 Sobic010G181300 Sobic010G181300 Sobic007G108900--Sobic010G181300 Sobic007G166300 Sobic007G166300 Sobic007G108900--Sobic007G166300 Sobic002G298800 Sobic002G298800 Sobic007G108900--Sobic002G298800 Sobic001G283100--Sobic006G090100 Sobic001G283100--Sobic003G094100 Sobic001G283100--Sobic001G207800 Sobic003G341300 Sobic003G341300 Sobic001G283100--Sobic003G341300 Sobic001G283100--Sobic007G108900 Sobic001G283100--Sobic001G393300 Sobic007G157300 Sobic007G157300 Sobic001G283100--Sobic007G157300 Sobic001G283100--Sobic001G509200 Sobic002G382700 Sobic002G382700 Sobic001G283100--Sobic002G382700 Sobic001G207800--Sobic006G090100 Sobic001G207800--Sobic001G283100 Sobic001G207800--Sobic002G382700 Sobic001G207800--Sobic001G509200 Sobic001G077300 Sobic001G077300 Sobic001G207800--Sobic001G077300 Sobic001G207800--Sobic007G108900 Sobic009G073900 Sobic009G073900 Sobic001G207800--Sobic009G073900 Sobic001G207800--Sobic003G341300 Sobic001G207800--Sobic007G157300 Sobic006G090100--Sobic001G207800 Sobic006G090100--Sobic001G283100 Sobic006G090100--Sobic001G077300 Sobic006G090100--Sobic001G509200 Sobic006G090100--Sobic009G073900 Sobic006G090100--Sobic002G382700 Sobic006G090100--Sobic003G341300 Sobic001G046000 Sobic001G046000 Sobic006G090100--Sobic001G046000 Sobic002G081400 Sobic002G081400 Sobic006G090100--Sobic002G081400 Sobic008G088821 Sobic008G088821 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic003G103300 Sobic003G103300 Sobic001G015200--Sobic003G103300 Sobic006G140500 Sobic006G140500 Sobic001G015200--Sobic006G140500 Sobic001G015200--Sobic002G047400 Sobic001G015200--Sobic001G509200 Sobic001G015200--Sobic001G393300 Sobic009G119300 Sobic009G119300 Sobic001G015200--Sobic009G119300 Sobic010G101000 Sobic010G101000 Sobic001G015200--Sobic010G101000 Sobic009G225600 Sobic009G225600 Sobic002G047400--Sobic009G225600 Sobic008G149100 Sobic008G149100 Sobic002G047400--Sobic008G149100 Sobic003G186800 Sobic003G186800 Sobic002G047400--Sobic003G186800 Sobic002G047400--Sobic001G046000 Sobic003G228300 Sobic003G228300 Sobic002G047400--Sobic003G228300 Sobic002G047400--Sobic001G015200 Sobic002G047400--Sobic010G101000 Sobic002G047400--Sobic001G509200 Sobic001G485100 Sobic001G485100 Sobic002G047400--Sobic001G485100 Sobic001G303200--Sobic001G283100 Sobic001G303200--Sobic002G382700 Sobic001G333800 Sobic001G333800 Sobic001G303200--Sobic001G333800 Sobic001G303200--Sobic001G207800 Sobic001G303200--Sobic006G102000 Sobic001G303200--Sobic007G108900 Sobic001G303200--Sobic006G221000 Sobic001G303200--Sobic006G090100 Sobic001G303200--Sobic003G094100 Sobic003G005000 Sobic003G005000 Sobic004G035900--Sobic003G005000 Sobic004G035900--Sobic001G283100 Sobic004G035900--Sobic001G485100 Sobic004G035900--Sobic003G003450 Sobic001G331600 Sobic001G331600 Sobic004G035900--Sobic001G331600 Sobic004G035900--Sobic007G157300 Sobic004G035900--Sobic008G149100 Sobic004G035900--Sobic001G015200 Sobic004G035900--Sobic003G228300 Sobic003G003450--Sobic009G073900 Sobic003G003450--Sobic001G077300 Sobic003G003450--Sobic001G509200 Sobic006G213700 Sobic006G213700 Sobic003G003450--Sobic006G213700 Sobic003G003450--Sobic002G081400 Sobic006G232600 Sobic006G232600 Sobic003G003450--Sobic006G232600 Sobic003G003450--Sobic006G090100 Sobic007G087100 Sobic007G087100 Sobic003G003450--Sobic007G087100 Sobic003G003450--Sobic001G207800
Octagon: transcription factors


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