Gene annotation
Transcriptome id Sobic.005G062700.1
Synonym NFU2, ATCNFU2, Sb05g005270
Functional annotation nifU, putative, expressed
UniProt C5Y664
Pfam PF01106
Panther DB PTHR31942 PTHR31942:SF30
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016226; iron-sulfur cluster assembly GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT5G49940 : NIFU-like protein 2
RAP-DB (Rice) LOC_Os11g07916.1 : nifU, putative, expressed
MaizeGDB (Corn) Zm00025a034030
Brachypodium KQJ89163
Barley HORVU4Hr1G018260.2 , HORVU4Hr1G018260.3 , HORVU4Hr1G018260.1 , HORVU4Hr1G018260.4
Wheat TraesCS4B02G097000 , TraesCS4B02G097000 , TraesCS4A02G218200 , TraesCS4A02G218200 , TraesCS4D02G093300 , TraesCS4D02G093300
Populus -


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cDNA sequences
Sobic.005G062700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
2 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
3 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
4 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -
5 Sobic.006G221000 starch synthase 3(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@soluble starch synthase 3, chloroplast precursor, putative, expressed -
6 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
7 Sobic.005G172400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PAP fibrillin family domain containing protein, expressed -
8 Sobic.007G108900 APE1, putative, expressed -
9 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
10 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.004G035900 expressed protein -
12 Sobic.004G275000 heat shock protein DnaJ, putative, expressed -
13 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
14 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
15 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
16 Sobic.003G228300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
17 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
18 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
19 Sobic.001G207800 integral membrane protein, putative, expressed -
20 Sobic.005G134100 rubredoxin family protein, putative, expressed -


Gene co-expression network
sample Sobic005G062700 Sobic005G062700 Sobic009G225600 Sobic009G225600 Sobic005G062700--Sobic009G225600 Sobic001G015200 Sobic001G015200 Sobic005G062700--Sobic001G015200 Sobic002G047400 Sobic002G047400 Sobic005G062700--Sobic002G047400 Sobic001G303200 Sobic001G303200 Sobic005G062700--Sobic001G303200 Sobic006G221000 Sobic006G221000 Sobic005G062700--Sobic006G221000 Sobic001G509200 Sobic001G509200 Sobic005G062700--Sobic001G509200 Sobic005G172400 Sobic005G172400 Sobic005G062700--Sobic005G172400 Sobic007G108900 Sobic007G108900 Sobic005G062700--Sobic007G108900 Sobic004G305900 Sobic004G305900 Sobic005G062700--Sobic004G305900 Sobic001G046000 Sobic001G046000 Sobic009G225600--Sobic001G046000 Sobic010G101000 Sobic010G101000 Sobic009G225600--Sobic010G101000 Sobic003G186800 Sobic003G186800 Sobic009G225600--Sobic003G186800 Sobic009G225600--Sobic002G047400 Sobic001G485100 Sobic001G485100 Sobic009G225600--Sobic001G485100 Sobic010G104700 Sobic010G104700 Sobic009G225600--Sobic010G104700 Sobic002G351200 Sobic002G351200 Sobic009G225600--Sobic002G351200 Sobic009G225600--Sobic001G015200 Sobic003G380200 Sobic003G380200 Sobic009G225600--Sobic003G380200 Sobic008G088821 Sobic008G088821 Sobic001G015200--Sobic008G088821 Sobic007G166300 Sobic007G166300 Sobic001G015200--Sobic007G166300 Sobic003G103300 Sobic003G103300 Sobic001G015200--Sobic003G103300 Sobic006G140500 Sobic006G140500 Sobic001G015200--Sobic006G140500 Sobic001G015200--Sobic002G047400 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic009G119300 Sobic009G119300 Sobic001G015200--Sobic009G119300 Sobic001G015200--Sobic010G101000 Sobic002G047400--Sobic009G225600 Sobic008G149100 Sobic008G149100 Sobic002G047400--Sobic008G149100 Sobic002G047400--Sobic003G186800 Sobic002G047400--Sobic001G046000 Sobic003G228300 Sobic003G228300 Sobic002G047400--Sobic003G228300 Sobic002G047400--Sobic001G015200 Sobic002G047400--Sobic010G101000 Sobic002G047400--Sobic001G509200 Sobic002G047400--Sobic001G485100 Sobic001G283100 Sobic001G283100 Sobic001G303200--Sobic001G283100 Sobic002G382700 Sobic002G382700 Sobic001G303200--Sobic002G382700 Sobic001G333800 Sobic001G333800 Sobic001G303200--Sobic001G333800 Sobic001G207800 Sobic001G207800 Sobic001G303200--Sobic001G207800 Sobic006G102000 Sobic006G102000 Sobic001G303200--Sobic006G102000 Sobic001G303200--Sobic007G108900 Sobic001G303200--Sobic006G221000 Sobic006G090100 Sobic006G090100 Sobic001G303200--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic001G303200--Sobic003G094100 Sobic006G221000--Sobic007G108900 Sobic006G221000--Sobic001G283100 Sobic006G221000--Sobic001G207800 Sobic006G221000--Sobic006G090100 Sobic006G221000--Sobic001G015200 Sobic006G221000--Sobic002G047400 Sobic006G221000--Sobic001G303200 Sobic004G035900 Sobic004G035900 Sobic006G221000--Sobic004G035900 Sobic003G003450 Sobic003G003450 Sobic006G221000--Sobic003G003450 Sobic007G135800 Sobic007G135800 Sobic001G509200--Sobic007G135800 Sobic004G103300 Sobic004G103300 Sobic001G509200--Sobic004G103300 Sobic001G509200--Sobic001G393300 Sobic001G509200--Sobic007G108900 Sobic001G509200--Sobic007G166300 Sobic001G509200--Sobic003G094100 Sobic006G213700 Sobic006G213700 Sobic001G509200--Sobic006G213700 Sobic001G509200--Sobic006G090100 Sobic009G073900 Sobic009G073900 Sobic001G509200--Sobic009G073900 Sobic001G104600 Sobic001G104600 Sobic005G172400--Sobic001G104600 Sobic005G172400--Sobic001G015200 Sobic005G172400--Sobic003G103300 Sobic005G172400--Sobic005G062700 Sobic005G172400--Sobic010G101000 Sobic005G172400--Sobic004G305900 Sobic001G289500 Sobic001G289500 Sobic005G172400--Sobic001G289500 Sobic001G317800 Sobic001G317800 Sobic005G172400--Sobic001G317800 Sobic005G172400--Sobic002G047400 Sobic007G108900--Sobic003G094100 Sobic007G108900--Sobic001G509200 Sobic007G108900--Sobic004G103300 Sobic007G108900--Sobic001G393300 Sobic007G108900--Sobic006G102000 Sobic007G108900--Sobic001G283100 Sobic010G181300 Sobic010G181300 Sobic007G108900--Sobic010G181300 Sobic007G108900--Sobic007G166300 Sobic002G298800 Sobic002G298800 Sobic007G108900--Sobic002G298800 Sobic004G305900--Sobic001G015200 Sobic004G305900--Sobic008G088821 Sobic004G305900--Sobic003G103300 Sobic005G028800 Sobic005G028800 Sobic004G305900--Sobic005G028800 Sobic004G305900--Sobic006G140500 Sobic001G167900 Sobic001G167900 Sobic004G305900--Sobic001G167900 Sobic004G305900--Sobic007G166300 Sobic004G305900--Sobic010G101000 Sobic004G028300 Sobic004G028300 Sobic004G305900--Sobic004G028300
Octagon: transcription factors


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