Gene annotation
| Transcriptome id | Sobic.008G088821.1 |
|---|---|
| Synonym | - |
| Functional annotation | - |
| UniProt | C6JRM7 , C6JRM8 , A0A109NDQ5 |
| Pfam | PF00348 |
| Panther DB | PTHR12001 PTHR12001:SF18 |
| NCBI CDD | KOG0776; Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase |
| KEGG Orthology | K05356; SPS, all-trans-nonaprenyl-diphosphate synthase |
| Gene Ontology | GO:0008299; isoprenoid biosynthetic process GO:0016765transferase activity, transferring alkyl or aryl (other than methyl) groups GO:0015979photosynthesis |
Orthologs (automatic annotation)
| TAIR | AT1G78510 : solanesyl diphosphate synthase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os12g17320.1 : polyprenyl synthetase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a000679 |
| Brachypodium | KQJ91692 , KQK04692 |
| Barley | HORVU1Hr1G091880.1 , HORVU1Hr1G091880.3 , HORVU1Hr1G091880.2 , HORVU1Hr1G091880.5 , HORVU1Hr1G091880.7 , HORVU1Hr1G091880.6 , HORVU1Hr1G091880.4 |
| Wheat | TraesCS1A02G420900 , TraesCS1A02G420900 , TraesCS1B02G452100 , TraesCS1D02G428800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G015200 | Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed | - |
| 2 | Sobic.006G140500 | photosystem-II repair protein, putative, expressed | - |
| 3 | Sobic.004G028300 | expressed protein | - |
| 4 | Sobic.009G119300 | peptide chain release factor 2, putative, expressed | - |
| 5 | Sobic.003G103300 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed | K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase |
| 6 | Sobic.001G018000 | amine oxidase, flavin-containing, domain containing protein, expressed | - |
| 7 | Sobic.004G268400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed | - |
| 8 | Sobic.010G101000 | peptide methionine sulfoxide reductase msrB, putative, expressed | K07305: peptide-methionine (R)-S-oxide reductase |
| 9 | Sobic.002G030900 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 10 | Sobic.003G186800 | transporter, major facilitator family, putative, expressed | - |
| 11 | Sobic.001G167900 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 12 | Sobic.004G305900 | heat shock protein DnaJ, putative, expressed | - |
| 13 | Sobic.005G028800 | astaxanthin synthase KC28, putative, expressed | - |
| 14 | Sobic.009G225600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | - |
| 15 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 16 | Sobic.002G047400 | "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed | - |
| 17 | Sobic.001G029600 | -(PubMedID : 26465154)@expressed protein | - |
| 18 | Sobic.004G267700 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 19 | Sobic.007G181400 | TraB family protein, putative, expressed | - |
| 20 | Sobic.005G134100 | rubredoxin family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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