Gene annotation
| Transcriptome id | Sobic.002G047400.1 |
|---|---|
| Synonym | Sb02g004000, ZKT, |
| Functional annotation | "protein containing PDZ domain, a K-box domain, and a TPR region" (PubMedID : 26465154) SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) SHOOT1 protein, putative, expressed |
| UniProt | C5XAD3 |
| Pfam | PF13432 |
| Panther DB | PTHR17130 PTHR17130:SF24 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G55480 : protein containing PDZ domain, a K-box domain, and a TPR region |
|---|---|
| RAP-DB (Rice) | LOC_Os07g07540.1 : SHOOT1 protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a045111 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.002G047400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G225600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | - |
| 2 | Sobic.008G149100 | B3 DNA binding domain containing protein, expressed | - |
| 3 | Sobic.003G186800 | transporter, major facilitator family, putative, expressed | - |
| 4 | Sobic.001G046000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 5 | Sobic.003G228300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed | - |
| 6 | Sobic.001G015200 | Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed | - |
| 7 | Sobic.010G101000 | peptide methionine sulfoxide reductase msrB, putative, expressed | K07305: peptide-methionine (R)-S-oxide reductase |
| 8 | Sobic.001G509200 | "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed | K11159: carotenoid cleavage oxygenase |
| 9 | Sobic.001G485100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 10 | Sobic.009G133700 | expressed protein | - |
| 11 | Sobic.002G030900 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 12 | Sobic.010G104700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 13 | Sobic.003G380200 | SNARE associated Golgi protein, putative, expressed | - |
| 14 | Sobic.006G140500 | photosystem-II repair protein, putative, expressed | - |
| 15 | Sobic.009G119300 | peptide chain release factor 2, putative, expressed | - |
| 16 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 17 | Sobic.001G499100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC-2 type transporter domain containing protein, expressed | - |
| 18 | Sobic.003G005000 | expressed protein | - |
| 19 | Sobic.008G088821 | - | K05356: SPS, all-trans-nonaprenyl-diphosphate synthase |
| 20 | Sobic.007G108900 | APE1, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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