Gene annotation
Transcriptome id Sobic.008G149100.1
Synonym Sb08g019900
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt A0A1B6PDW9
Pfam PF02362
Panther DB PTHR31920 PTHR31920:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT4G33280 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os12g40120.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004492
Brachypodium KQJ86030 , PNT62415 , PNT62416
Barley -
Wheat TraesCS5A02G065100 , TraesCS5B02G073400 , TraesCS5B02G071900 , TraesCS5A02G065000 , TraesCS5D02G077800
Populus -


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cDNA sequences
Sobic.008G149100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
2 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G499100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC-2 type transporter domain containing protein, expressed -
4 Sobic.003G228300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
5 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
6 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
7 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
8 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
9 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
10 Sobic.009G133700 expressed protein -
11 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
12 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
14 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
15 Sobic.004G035900 expressed protein -
16 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
17 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
18 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.002G072500 expressed protein -
20 Sobic.001G317800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic008G149100 Sobic008G149100 Sobic002G047400 Sobic002G047400 Sobic008G149100--Sobic002G047400 Sobic001G046000 Sobic001G046000 Sobic008G149100--Sobic001G046000 Sobic001G499100 Sobic001G499100 Sobic008G149100--Sobic001G499100 Sobic003G228300 Sobic003G228300 Sobic008G149100--Sobic003G228300 Sobic001G509200 Sobic001G509200 Sobic008G149100--Sobic001G509200 Sobic004G153900 Sobic004G153900 Sobic008G149100--Sobic004G153900 Sobic010G104700 Sobic010G104700 Sobic008G149100--Sobic010G104700 Sobic001G393300 Sobic001G393300 Sobic008G149100--Sobic001G393300 Sobic010G101000 Sobic010G101000 Sobic008G149100--Sobic010G101000 Sobic009G225600 Sobic009G225600 Sobic002G047400--Sobic009G225600 Sobic002G047400--Sobic008G149100 Sobic003G186800 Sobic003G186800 Sobic002G047400--Sobic003G186800 Sobic002G047400--Sobic001G046000 Sobic002G047400--Sobic003G228300 Sobic001G015200 Sobic001G015200 Sobic002G047400--Sobic001G015200 Sobic002G047400--Sobic010G101000 Sobic002G047400--Sobic001G509200 Sobic001G485100 Sobic001G485100 Sobic002G047400--Sobic001G485100 Sobic001G046000--Sobic009G225600 Sobic001G046000--Sobic001G485100 Sobic001G046000--Sobic010G104700 Sobic001G046000--Sobic002G047400 Sobic001G046000--Sobic003G186800 Sobic001G046000--Sobic010G101000 Sobic006G090100 Sobic006G090100 Sobic001G046000--Sobic006G090100 Sobic001G046000--Sobic004G153900 Sobic006G191500 Sobic006G191500 Sobic001G046000--Sobic006G191500 Sobic007G135800 Sobic007G135800 Sobic001G499100--Sobic007G135800 Sobic001G499100--Sobic001G509200 Sobic001G499100--Sobic008G149100 Sobic006G213700 Sobic006G213700 Sobic001G499100--Sobic006G213700 Sobic001G499100--Sobic003G228300 Sobic003G409700 Sobic003G409700 Sobic001G499100--Sobic003G409700 Sobic007G108900 Sobic007G108900 Sobic001G499100--Sobic007G108900 Sobic001G499100--Sobic001G393300 Sobic001G499100--Sobic002G047400 Sobic003G228300--Sobic001G485100 Sobic003G228300--Sobic002G047400 Sobic003G228300--Sobic006G191500 Sobic003G228300--Sobic003G409700 Sobic003G228300--Sobic008G149100 Sobic003G228300--Sobic001G499100 Sobic009G133700 Sobic009G133700 Sobic003G228300--Sobic009G133700 Sobic003G228300--Sobic001G046000 Sobic003G380200 Sobic003G380200 Sobic003G228300--Sobic003G380200 Sobic001G509200--Sobic007G135800 Sobic004G103300 Sobic004G103300 Sobic001G509200--Sobic004G103300 Sobic001G509200--Sobic001G393300 Sobic001G509200--Sobic007G108900 Sobic007G166300 Sobic007G166300 Sobic001G509200--Sobic007G166300 Sobic003G094100 Sobic003G094100 Sobic001G509200--Sobic003G094100 Sobic001G509200--Sobic006G213700 Sobic001G509200--Sobic006G090100 Sobic009G073900 Sobic009G073900 Sobic001G509200--Sobic009G073900 Sobic004G128900 Sobic004G128900 Sobic004G153900--Sobic004G128900 Sobic002G161400 Sobic002G161400 Sobic004G153900--Sobic002G161400 Sobic004G153900--Sobic010G104700 Sobic004G153900--Sobic001G046000 Sobic001G331600 Sobic001G331600 Sobic004G153900--Sobic001G331600 Sobic004G153900--Sobic006G191500 Sobic004G153900--Sobic001G485100 Sobic004G153900--Sobic008G149100 Sobic004G344600 Sobic004G344600 Sobic004G153900--Sobic004G344600 Sobic010G104700--Sobic001G046000 Sobic003G304300 Sobic003G304300 Sobic010G104700--Sobic003G304300 Sobic010G104700--Sobic010G101000 Sobic010G104700--Sobic004G344600 Sobic010G104700--Sobic004G153900 Sobic010G104700--Sobic009G225600 Sobic010G104700--Sobic002G161400 Sobic008G180800 Sobic008G180800 Sobic010G104700--Sobic008G180800 Sobic002G351200 Sobic002G351200 Sobic010G104700--Sobic002G351200 Sobic002G298800 Sobic002G298800 Sobic001G393300--Sobic002G298800 Sobic001G393300--Sobic007G166300 Sobic001G393300--Sobic001G509200 Sobic001G393300--Sobic004G103300 Sobic001G393300--Sobic003G094100 Sobic001G393300--Sobic007G108900 Sobic002G198300 Sobic002G198300 Sobic001G393300--Sobic002G198300 Sobic001G393300--Sobic007G135800 Sobic002G072500 Sobic002G072500 Sobic001G393300--Sobic002G072500 Sobic004G267700 Sobic004G267700 Sobic010G101000--Sobic004G267700 Sobic010G101000--Sobic009G225600 Sobic002G030900 Sobic002G030900 Sobic010G101000--Sobic002G030900 Sobic010G101000--Sobic003G186800 Sobic010G101000--Sobic002G351200 Sobic001G018000 Sobic001G018000 Sobic010G101000--Sobic001G018000 Sobic010G101000--Sobic010G104700 Sobic004G268400 Sobic004G268400 Sobic010G101000--Sobic004G268400 Sobic010G101000--Sobic003G304300
Octagon: transcription factors


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