Gene annotation
| Transcriptome id | Sobic.001G015200.1 |
|---|---|
| Synonym | Sb01g001480 |
| Functional annotation | Unnamed (PubMedID : 24676859) S1 RNA binding domain containing protein, expressed |
| UniProt | C5WSY9 |
| Pfam | PF00575 |
| Panther DB | PTHR23270 PTHR23270:SF9 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0003676; nucleic acid binding |
Orthologs (automatic annotation)
| TAIR | AT3G23700 : Nucleic acid-binding proteins superfamily |
|---|---|
| RAP-DB (Rice) | LOC_Os03g62780.1 : S1 RNA binding domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a009009 |
| Brachypodium | KQK12153 |
| Barley | HORVU5Hr1G120650.11 , HORVU5Hr1G120650.10 , HORVU5Hr1G120650.9 , HORVU5Hr1G120650.3 , HORVU5Hr1G120650.2 , HORVU5Hr1G120650.1 , HORVU5Hr1G120650.7 , HORVU5Hr1G120650.5 , HORVU5Hr1G120650.4 |
| Wheat | TraesCS5D02G532100 , TraesCS4A02G340600 , TraesCS5B02G534400 , TraesCS5B02G534400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G088821 | - | K05356: SPS, all-trans-nonaprenyl-diphosphate synthase |
| 2 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 3 | Sobic.003G103300 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed | K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase |
| 4 | Sobic.006G140500 | photosystem-II repair protein, putative, expressed | - |
| 5 | Sobic.002G047400 | "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed | - |
| 6 | Sobic.001G509200 | "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed | K11159: carotenoid cleavage oxygenase |
| 7 | Sobic.001G393300 | HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed | - |
| 8 | Sobic.009G119300 | peptide chain release factor 2, putative, expressed | - |
| 9 | Sobic.010G101000 | peptide methionine sulfoxide reductase msrB, putative, expressed | K07305: peptide-methionine (R)-S-oxide reductase |
| 10 | Sobic.007G181400 | TraB family protein, putative, expressed | - |
| 11 | Sobic.009G225600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | - |
| 12 | Sobic.005G028800 | astaxanthin synthase KC28, putative, expressed | - |
| 13 | Sobic.007G108900 | APE1, putative, expressed | - |
| 14 | Sobic.001G289500 | kinase, pfkB family, putative, expressed | - |
| 15 | Sobic.003G094100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 16 | Sobic.004G028300 | expressed protein | - |
| 17 | Sobic.002G030900 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 18 | Sobic.001G104600 | expressed protein | - |
| 19 | Sobic.003G005000 | expressed protein | - |
| 20 | Sobic.004G268400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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