Gene annotation
Transcriptome id Sobic.007G181400.7,Sobic.007G181400.4,Sobic.007G181400.8,Sobic.007G181400.6,Sobic.007G181400.3,Sobic.007G181400.5
Synonym Sb07g025200
Functional annotation TraB family protein, putative, expressed
UniProt A0A1Z5RAG2 , A0A1Z5RBF5 , A0A1Z5RAG1 , A0A1Z5RAI4
Pfam PF01963
Panther DB PTHR21530 PTHR21530:SF1 PTHR21530:SF1 PTHR21530
NCBI CDD KOG2860; Uncharacterized conserved protein, contains TraB domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G52030 : TraB family protein
RAP-DB (Rice) LOC_Os08g43230.1 : TraB family protein, putative, expressed
MaizeGDB (Corn) Zm00025a040238 , Zm00025a005369
Brachypodium KQJ99183
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G181400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
2 Sobic.003G419900 photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed K08903: photosystem II 13kDa protein
3 Sobic.004G359600 cell division inhibitor, putative, expressed K07071: uncharacterized protein
4 Sobic.004G202200 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
5 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
6 Sobic.001G289500 kinase, pfkB family, putative, expressed -
7 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
8 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
10 Sobic.007G225500 expressed protein -
11 Sobic.002G370600 - -
12 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1
13 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
14 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
15 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
16 Sobic.001G005200 expressed protein -
17 Sobic.007G108900 APE1, putative, expressed -
18 Sobic.004G028300 expressed protein -
19 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
20 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -


Gene co-expression network
sample Sobic007G181400 Sobic007G181400 Sobic001G015200 Sobic001G015200 Sobic007G181400--Sobic001G015200 Sobic003G419900 Sobic003G419900 Sobic007G181400--Sobic003G419900 Sobic004G359600 Sobic004G359600 Sobic007G181400--Sobic004G359600 Sobic004G202200 Sobic004G202200 Sobic007G181400--Sobic004G202200 Sobic002G275300 Sobic002G275300 Sobic007G181400--Sobic002G275300 Sobic001G289500 Sobic001G289500 Sobic007G181400--Sobic001G289500 Sobic001G491000 Sobic001G491000 Sobic007G181400--Sobic001G491000 Sobic006G238200 Sobic006G238200 Sobic007G181400--Sobic006G238200 Sobic008G088821 Sobic008G088821 Sobic007G181400--Sobic008G088821 Sobic001G015200--Sobic008G088821 Sobic007G166300 Sobic007G166300 Sobic001G015200--Sobic007G166300 Sobic003G103300 Sobic003G103300 Sobic001G015200--Sobic003G103300 Sobic006G140500 Sobic006G140500 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G509200 Sobic001G509200 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic009G119300 Sobic009G119300 Sobic001G015200--Sobic009G119300 Sobic010G101000 Sobic010G101000 Sobic001G015200--Sobic010G101000 Sobic003G419900--Sobic007G181400 Sobic004G353100 Sobic004G353100 Sobic003G419900--Sobic004G353100 Sobic003G419900--Sobic004G359600 Sobic003G419900--Sobic004G202200 Sobic002G233700 Sobic002G233700 Sobic003G419900--Sobic002G233700 Sobic003G419900--Sobic006G140500 Sobic004G028300 Sobic004G028300 Sobic003G419900--Sobic004G028300 Sobic003G419900--Sobic001G289500 Sobic003G419900--Sobic001G015200 Sobic007G173800 Sobic007G173800 Sobic004G359600--Sobic007G173800 Sobic001G167900 Sobic001G167900 Sobic004G359600--Sobic001G167900 Sobic008G102000 Sobic008G102000 Sobic004G359600--Sobic008G102000 Sobic004G359600--Sobic007G181400 Sobic003G378600 Sobic003G378600 Sobic004G359600--Sobic003G378600 Sobic006G265900 Sobic006G265900 Sobic004G359600--Sobic006G265900 Sobic001G005200 Sobic001G005200 Sobic004G359600--Sobic001G005200 Sobic008G172700 Sobic008G172700 Sobic004G359600--Sobic008G172700 Sobic009G140600 Sobic009G140600 Sobic004G359600--Sobic009G140600 Sobic004G202200--Sobic001G289500 Sobic006G235350 Sobic006G235350 Sobic004G202200--Sobic006G235350 Sobic004G202200--Sobic006G140500 Sobic009G133700 Sobic009G133700 Sobic004G202200--Sobic009G133700 Sobic001G029600 Sobic001G029600 Sobic004G202200--Sobic001G029600 Sobic003G094100 Sobic003G094100 Sobic004G202200--Sobic003G094100 Sobic003G005000 Sobic003G005000 Sobic004G202200--Sobic003G005000 Sobic004G202200--Sobic001G015200 Sobic004G202200--Sobic007G181400 Sobic002G275300--Sobic006G238200 Sobic010G181300 Sobic010G181300 Sobic002G275300--Sobic010G181300 Sobic002G275300--Sobic001G491000 Sobic002G298800 Sobic002G298800 Sobic002G275300--Sobic002G298800 Sobic007G108900 Sobic007G108900 Sobic002G275300--Sobic007G108900 Sobic007G225500 Sobic007G225500 Sobic002G275300--Sobic007G225500 Sobic007G103400 Sobic007G103400 Sobic002G275300--Sobic007G103400 Sobic010G035400 Sobic010G035400 Sobic002G275300--Sobic010G035400 Sobic003G306200 Sobic003G306200 Sobic002G275300--Sobic003G306200 Sobic001G289500--Sobic003G005000 Sobic001G289500--Sobic001G491000 Sobic001G289500--Sobic004G202200 Sobic001G289500--Sobic006G238200 Sobic006G102000 Sobic006G102000 Sobic001G289500--Sobic006G102000 Sobic001G289500--Sobic010G181300 Sobic001G289500--Sobic007G108900 Sobic001G289500--Sobic003G094100 Sobic001G289500--Sobic002G275300 Sobic001G491000--Sobic006G238200 Sobic001G491000--Sobic010G181300 Sobic001G100000 Sobic001G100000 Sobic001G491000--Sobic001G100000 Sobic001G491000--Sobic002G275300 Sobic001G491000--Sobic001G289500 Sobic009G129300 Sobic009G129300 Sobic001G491000--Sobic009G129300 Sobic002G370600 Sobic002G370600 Sobic001G491000--Sobic002G370600 Sobic009G237100 Sobic009G237100 Sobic001G491000--Sobic009G237100 Sobic004G305800 Sobic004G305800 Sobic001G491000--Sobic004G305800 Sobic006G238200--Sobic001G491000 Sobic006G238200--Sobic002G275300 Sobic006G238200--Sobic010G181300 Sobic006G238200--Sobic001G100000 Sobic006G238200--Sobic009G237100 Sobic003G398800 Sobic003G398800 Sobic006G238200--Sobic003G398800 Sobic006G238200--Sobic001G289500 Sobic006G238200--Sobic002G370600 Sobic006G238200--Sobic007G225500 Sobic008G088821--Sobic001G015200 Sobic008G088821--Sobic006G140500 Sobic008G088821--Sobic004G028300 Sobic008G088821--Sobic009G119300 Sobic008G088821--Sobic003G103300 Sobic001G018000 Sobic001G018000 Sobic008G088821--Sobic001G018000 Sobic004G268400 Sobic004G268400 Sobic008G088821--Sobic004G268400 Sobic008G088821--Sobic010G101000 Sobic002G030900 Sobic002G030900 Sobic008G088821--Sobic002G030900
Octagon: transcription factors


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