Gene annotation
Transcriptome id Sobic.004G202200.1
Synonym ATRAB8D, RABE1b, ATRABE1B, Sb04g024850
Functional annotation elongation factor Tu, putative, expressed
UniProt C5XWJ8
Pfam PF03144 PF03143 PF00009
Panther DB PTHR23115 PTHR23115:SF146
NCBI CDD -
KEGG Orthology K02358; tuf, elongation factor Tu
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G20360 : RAB GTPase homolog E1B
RAP-DB (Rice) LOC_Os02g38210.1 : elongation factor Tu, putative, expressed
MaizeGDB (Corn) Zm00025a031841 , Zm00025a021312
Brachypodium PNT68963 , KQK00163
Barley HORVU6Hr1G053680.6 , HORVU6Hr1G053680.7 , HORVU6Hr1G053680.4 , HORVU6Hr1G053680.5 , HORVU6Hr1G053680.2 , HORVU6Hr1G053680.3 , HORVU6Hr1G053680.1 , HORVU6Hr1G053680.8 , HORVU5Hr1G122350.4 , HORVU5Hr1G122350.1 , HORVU5Hr1G122350.2 , HORVU5Hr1G122350.3 , HORVU3Hr1G096700.1
Wheat TraesCS5D02G542300 , TraesCS5B02G545200 , TraesCS5B02G545300 , TraesCS4A02G330400 , TraesCS5B02G545300
Populus -


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cDNA sequences
Sobic.004G202200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G289500 kinase, pfkB family, putative, expressed -
2 Sobic.006G235350 - -
3 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
4 Sobic.009G133700 expressed protein -
5 Sobic.001G029600 -(PubMedID : 26465154)@expressed protein -
6 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G005000 expressed protein -
8 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
9 Sobic.007G181400 TraB family protein, putative, expressed -
10 Sobic.003G409700 rieske domain containing protein, expressed -
11 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
12 Sobic.003G419900 photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed K08903: photosystem II 13kDa protein
13 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
14 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
15 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
16 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
18 Sobic.002G306800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
19 Sobic.007G103400 expressed protein -
20 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -


Gene co-expression network
sample Sobic004G202200 Sobic004G202200 Sobic001G289500 Sobic001G289500 Sobic004G202200--Sobic001G289500 Sobic006G235350 Sobic006G235350 Sobic004G202200--Sobic006G235350 Sobic006G140500 Sobic006G140500 Sobic004G202200--Sobic006G140500 Sobic009G133700 Sobic009G133700 Sobic004G202200--Sobic009G133700 Sobic001G029600 Sobic001G029600 Sobic004G202200--Sobic001G029600 Sobic003G094100 Sobic003G094100 Sobic004G202200--Sobic003G094100 Sobic003G005000 Sobic003G005000 Sobic004G202200--Sobic003G005000 Sobic001G015200 Sobic001G015200 Sobic004G202200--Sobic001G015200 Sobic007G181400 Sobic007G181400 Sobic004G202200--Sobic007G181400 Sobic001G289500--Sobic003G005000 Sobic001G491000 Sobic001G491000 Sobic001G289500--Sobic001G491000 Sobic001G289500--Sobic004G202200 Sobic006G238200 Sobic006G238200 Sobic001G289500--Sobic006G238200 Sobic006G102000 Sobic006G102000 Sobic001G289500--Sobic006G102000 Sobic010G181300 Sobic010G181300 Sobic001G289500--Sobic010G181300 Sobic007G108900 Sobic007G108900 Sobic001G289500--Sobic007G108900 Sobic001G289500--Sobic003G094100 Sobic002G275300 Sobic002G275300 Sobic001G289500--Sobic002G275300 Sobic006G235350--Sobic006G140500 Sobic006G235350--Sobic004G202200 Sobic007G166300 Sobic007G166300 Sobic006G235350--Sobic007G166300 Sobic005G028800 Sobic005G028800 Sobic006G235350--Sobic005G028800 Sobic006G235350--Sobic003G005000 Sobic006G235350--Sobic001G289500 Sobic002G223700 Sobic002G223700 Sobic006G235350--Sobic002G223700 Sobic006G235350--Sobic001G015200 Sobic009G132000 Sobic009G132000 Sobic006G235350--Sobic009G132000 Sobic008G088821 Sobic008G088821 Sobic006G140500--Sobic008G088821 Sobic006G140500--Sobic006G235350 Sobic006G140500--Sobic001G015200 Sobic006G140500--Sobic001G029600 Sobic009G119300 Sobic009G119300 Sobic006G140500--Sobic009G119300 Sobic004G028300 Sobic004G028300 Sobic006G140500--Sobic004G028300 Sobic006G140500--Sobic004G202200 Sobic006G140500--Sobic005G028800 Sobic006G140500--Sobic007G166300 Sobic007G157300 Sobic007G157300 Sobic009G133700--Sobic007G157300 Sobic003G409700 Sobic003G409700 Sobic009G133700--Sobic003G409700 Sobic009G133700--Sobic003G094100 Sobic003G341300 Sobic003G341300 Sobic009G133700--Sobic003G341300 Sobic002G047400 Sobic002G047400 Sobic009G133700--Sobic002G047400 Sobic007G135800 Sobic007G135800 Sobic009G133700--Sobic007G135800 Sobic009G133700--Sobic003G005000 Sobic003G228300 Sobic003G228300 Sobic009G133700--Sobic003G228300 Sobic009G133700--Sobic004G202200 Sobic001G029600--Sobic006G140500 Sobic001G029600--Sobic004G202200 Sobic004G267700 Sobic004G267700 Sobic001G029600--Sobic004G267700 Sobic001G029600--Sobic009G119300 Sobic004G268400 Sobic004G268400 Sobic001G029600--Sobic004G268400 Sobic001G029600--Sobic008G088821 Sobic003G380200 Sobic003G380200 Sobic001G029600--Sobic003G380200 Sobic001G029600--Sobic009G133700 Sobic001G029600--Sobic001G015200 Sobic003G094100--Sobic007G108900 Sobic001G509200 Sobic001G509200 Sobic003G094100--Sobic001G509200 Sobic003G094100--Sobic007G135800 Sobic001G393300 Sobic001G393300 Sobic003G094100--Sobic001G393300 Sobic001G283100 Sobic001G283100 Sobic003G094100--Sobic001G283100 Sobic003G094100--Sobic007G157300 Sobic004G103300 Sobic004G103300 Sobic003G094100--Sobic004G103300 Sobic001G180200 Sobic001G180200 Sobic003G094100--Sobic001G180200 Sobic002G298800 Sobic002G298800 Sobic003G094100--Sobic002G298800 Sobic003G005000--Sobic001G289500 Sobic003G005000--Sobic003G094100 Sobic003G005000--Sobic009G132000 Sobic002G306800 Sobic002G306800 Sobic003G005000--Sobic002G306800 Sobic003G005000--Sobic007G108900 Sobic010G039500 Sobic010G039500 Sobic003G005000--Sobic010G039500 Sobic003G005000--Sobic009G133700 Sobic003G005000--Sobic007G157300 Sobic004G035900 Sobic004G035900 Sobic003G005000--Sobic004G035900 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic003G103300 Sobic003G103300 Sobic001G015200--Sobic003G103300 Sobic001G015200--Sobic006G140500 Sobic001G015200--Sobic002G047400 Sobic001G015200--Sobic001G509200 Sobic001G015200--Sobic001G393300 Sobic001G015200--Sobic009G119300 Sobic010G101000 Sobic010G101000 Sobic001G015200--Sobic010G101000 Sobic007G181400--Sobic001G015200 Sobic003G419900 Sobic003G419900 Sobic007G181400--Sobic003G419900 Sobic004G359600 Sobic004G359600 Sobic007G181400--Sobic004G359600 Sobic007G181400--Sobic004G202200 Sobic007G181400--Sobic002G275300 Sobic007G181400--Sobic001G289500 Sobic007G181400--Sobic001G491000 Sobic007G181400--Sobic006G238200 Sobic007G181400--Sobic008G088821
Octagon: transcription factors


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