Gene annotation
Transcriptome id Sobic.001G491000.1,Sobic.001G491000.3,Sobic.001G491000.4,Sobic.001G491000.2
Synonym Sb01g045920, RPE, EMB2728
Functional annotation ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
UniProt C5WWR4 , A0A1B6QQA6 , A0A1B6QQC2 , A0A1B6QQ97
Pfam PF00834
Panther DB PTHR11749 PTHR11749:SF4
NCBI CDD KOG3111; D-ribulose-5-phosphate 3-epimerase
KEGG Orthology K01783; rpe, ribulose-phosphate 3-epimerase
Gene Ontology GO:0016857; racemase and epimerase activity, acting on carbohydrates and derivatives GO:0005975carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT5G61410 : D-ribulose-5-phosphate-3-epimerase
RAP-DB (Rice) LOC_Os03g07300.1 : ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a000841 , Zm00025a053345
Brachypodium KQK23441
Barley HORVU4Hr1G074810.6 , HORVU4Hr1G074810.7 , HORVU4Hr1G074810.4 , HORVU4Hr1G074810.5 , HORVU4Hr1G074810.2 , HORVU4Hr1G074810.3 , HORVU4Hr1G074810.1 , HORVU4Hr1G074810.8
Wheat TraesCS4A02G019100 , TraesCS4D02G283800 , TraesCS4B02G285000
Populus -


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cDNA sequences
Sobic.001G491000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
3 Sobic.001G100000 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
4 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
5 Sobic.001G289500 kinase, pfkB family, putative, expressed -
6 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
7 Sobic.002G370600 - -
8 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
9 Sobic.004G305800 expressed protein -
10 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
11 Sobic.003G398800 expressed protein -
12 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.007G108900 APE1, putative, expressed -
14 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
15 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
16 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
18 Sobic.006G077400 PAP fibrillin family domain containing protein, expressed -
19 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
20 Sobic.010G201700 GA16396-PA, putative, expressed -


Gene co-expression network
sample Sobic001G491000 Sobic001G491000 Sobic006G238200 Sobic006G238200 Sobic001G491000--Sobic006G238200 Sobic010G181300 Sobic010G181300 Sobic001G491000--Sobic010G181300 Sobic001G100000 Sobic001G100000 Sobic001G491000--Sobic001G100000 Sobic002G275300 Sobic002G275300 Sobic001G491000--Sobic002G275300 Sobic001G289500 Sobic001G289500 Sobic001G491000--Sobic001G289500 Sobic009G129300 Sobic009G129300 Sobic001G491000--Sobic009G129300 Sobic002G370600 Sobic002G370600 Sobic001G491000--Sobic002G370600 Sobic009G237100 Sobic009G237100 Sobic001G491000--Sobic009G237100 Sobic004G305800 Sobic004G305800 Sobic001G491000--Sobic004G305800 Sobic006G238200--Sobic001G491000 Sobic006G238200--Sobic002G275300 Sobic006G238200--Sobic010G181300 Sobic006G238200--Sobic001G100000 Sobic006G238200--Sobic009G237100 Sobic003G398800 Sobic003G398800 Sobic006G238200--Sobic003G398800 Sobic006G238200--Sobic001G289500 Sobic006G238200--Sobic002G370600 Sobic007G225500 Sobic007G225500 Sobic006G238200--Sobic007G225500 Sobic010G181300--Sobic001G491000 Sobic010G181300--Sobic002G275300 Sobic010G181300--Sobic006G238200 Sobic007G108900 Sobic007G108900 Sobic010G181300--Sobic007G108900 Sobic010G181300--Sobic009G129300 Sobic010G181300--Sobic001G289500 Sobic006G102000 Sobic006G102000 Sobic010G181300--Sobic006G102000 Sobic010G181300--Sobic002G370600 Sobic010G181300--Sobic003G398800 Sobic001G100000--Sobic001G491000 Sobic001G100000--Sobic006G238200 Sobic001G100000--Sobic009G237100 Sobic001G100000--Sobic002G275300 Sobic006G207800 Sobic006G207800 Sobic001G100000--Sobic006G207800 Sobic010G201700 Sobic010G201700 Sobic001G100000--Sobic010G201700 Sobic001G100000--Sobic010G181300 Sobic001G100000--Sobic001G289500 Sobic004G272100 Sobic004G272100 Sobic001G100000--Sobic004G272100 Sobic002G275300--Sobic006G238200 Sobic002G275300--Sobic010G181300 Sobic002G275300--Sobic001G491000 Sobic002G298800 Sobic002G298800 Sobic002G275300--Sobic002G298800 Sobic002G275300--Sobic007G108900 Sobic002G275300--Sobic007G225500 Sobic007G103400 Sobic007G103400 Sobic002G275300--Sobic007G103400 Sobic010G035400 Sobic010G035400 Sobic002G275300--Sobic010G035400 Sobic003G306200 Sobic003G306200 Sobic002G275300--Sobic003G306200 Sobic003G005000 Sobic003G005000 Sobic001G289500--Sobic003G005000 Sobic001G289500--Sobic001G491000 Sobic004G202200 Sobic004G202200 Sobic001G289500--Sobic004G202200 Sobic001G289500--Sobic006G238200 Sobic001G289500--Sobic006G102000 Sobic001G289500--Sobic010G181300 Sobic001G289500--Sobic007G108900 Sobic003G094100 Sobic003G094100 Sobic001G289500--Sobic003G094100 Sobic001G289500--Sobic002G275300 Sobic009G129300--Sobic001G491000 Sobic009G129300--Sobic010G181300 Sobic009G129300--Sobic003G398800 Sobic003G127800 Sobic003G127800 Sobic009G129300--Sobic003G127800 Sobic009G129300--Sobic004G305800 Sobic009G129300--Sobic006G238200 Sobic009G129300--Sobic002G275300 Sobic004G268000 Sobic004G268000 Sobic009G129300--Sobic004G268000 Sobic007G161500 Sobic007G161500 Sobic009G129300--Sobic007G161500 Sobic002G370600--Sobic004G305800 Sobic002G370600--Sobic001G491000 Sobic002G370600--Sobic010G181300 Sobic002G370600--Sobic006G238200 Sobic010G245200 Sobic010G245200 Sobic002G370600--Sobic010G245200 Sobic003G431700 Sobic003G431700 Sobic002G370600--Sobic003G431700 Sobic002G370600--Sobic001G289500 Sobic003G370000 Sobic003G370000 Sobic002G370600--Sobic003G370000 Sobic009G043000 Sobic009G043000 Sobic002G370600--Sobic009G043000 Sobic007G009200 Sobic007G009200 Sobic009G237100--Sobic007G009200 Sobic009G237100--Sobic006G207800 Sobic009G237100--Sobic006G238200 Sobic009G237100--Sobic001G100000 Sobic009G237100--Sobic001G491000 Sobic009G237100--Sobic002G275300 Sobic009G237100--Sobic010G035400 Sobic001G102800 Sobic001G102800 Sobic009G237100--Sobic001G102800 Sobic009G237100--Sobic010G181300 Sobic004G305800--Sobic002G370600 Sobic004G305800--Sobic001G491000 Sobic005G056400 Sobic005G056400 Sobic004G305800--Sobic005G056400 Sobic004G305800--Sobic009G129300 Sobic004G305800--Sobic004G268000 Sobic004G305800--Sobic010G201700 Sobic004G305800--Sobic007G161500 Sobic003G431900 Sobic003G431900 Sobic004G305800--Sobic003G431900 Sobic004G305800--Sobic006G238200
Octagon: transcription factors


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