Gene annotation
Transcriptome id Sobic.002G275300.1
Synonym Sb02g030890
Functional annotation deoxyribodipyrimidine photolyase family protein, expressed
UniProt A0A1B6QDR7
Pfam PF12697 PF00875
Panther DB PTHR10992 PTHR10992:SF754
NCBI CDD KOG1454; Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G25290 : DNA photolyases;DNA photolyases
RAP-DB (Rice) LOC_Os09g36240.1 : deoxyribodipyrimidine photolyase family protein, expressed
MaizeGDB (Corn) Zm00025a047791
Brachypodium KQJ91192 , KQJ91193 , KQJ91197 , KQJ91198 , KQJ91200 , KQJ91202 , KQJ91201
Barley HORVU5Hr1G081750.16 , HORVU5Hr1G081750.17 , HORVU5Hr1G081750.14 , HORVU5Hr1G081750.15 , HORVU5Hr1G081750.12 , HORVU5Hr1G081750.13 , HORVU5Hr1G081750.10 , HORVU5Hr1G081750.11 , HORVU5Hr1G081750.18 , HORVU5Hr1G081750.19 , HORVU5Hr1G081750.23 , HORVU5Hr1G081750.22 , HORVU5Hr1G081750.21 , HORVU5Hr1G081750.20 , HORVU5Hr1G081750.4 , HORVU5Hr1G081750.5 , HORVU5Hr1G081750.6 , HORVU5Hr1G081750.7 , HORVU5Hr1G081750.1 , HORVU5Hr1G081750.2 , HORVU5Hr1G081750.3 , HORVU5Hr1G081750.8 , HORVU5Hr1G081750.9
Wheat TraesCS5D02G326500 , TraesCS5D02G326500 , TraesCS5D02G326500 , TraesCS5A02G320400 , TraesCS5B02G320700 , TraesCS5B02G320700
Populus -


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cDNA sequences
Sobic.002G275300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
3 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
4 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
5 Sobic.007G108900 APE1, putative, expressed -
6 Sobic.007G225500 expressed protein -
7 Sobic.007G103400 expressed protein -
8 Sobic.010G035400 expressed protein -
9 Sobic.003G306200 hemimethylated DNA binding domain containing protein, expressed -
10 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
11 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
12 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
13 Sobic.001G100000 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
14 Sobic.001G289500 kinase, pfkB family, putative, expressed -
15 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
16 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
17 Sobic.003G398800 expressed protein -
18 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
19 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic002G275300 Sobic002G275300 Sobic006G238200 Sobic006G238200 Sobic002G275300--Sobic006G238200 Sobic010G181300 Sobic010G181300 Sobic002G275300--Sobic010G181300 Sobic001G491000 Sobic001G491000 Sobic002G275300--Sobic001G491000 Sobic002G298800 Sobic002G298800 Sobic002G275300--Sobic002G298800 Sobic007G108900 Sobic007G108900 Sobic002G275300--Sobic007G108900 Sobic007G225500 Sobic007G225500 Sobic002G275300--Sobic007G225500 Sobic007G103400 Sobic007G103400 Sobic002G275300--Sobic007G103400 Sobic010G035400 Sobic010G035400 Sobic002G275300--Sobic010G035400 Sobic003G306200 Sobic003G306200 Sobic002G275300--Sobic003G306200 Sobic006G238200--Sobic001G491000 Sobic006G238200--Sobic002G275300 Sobic006G238200--Sobic010G181300 Sobic001G100000 Sobic001G100000 Sobic006G238200--Sobic001G100000 Sobic009G237100 Sobic009G237100 Sobic006G238200--Sobic009G237100 Sobic003G398800 Sobic003G398800 Sobic006G238200--Sobic003G398800 Sobic001G289500 Sobic001G289500 Sobic006G238200--Sobic001G289500 Sobic002G370600 Sobic002G370600 Sobic006G238200--Sobic002G370600 Sobic006G238200--Sobic007G225500 Sobic010G181300--Sobic001G491000 Sobic010G181300--Sobic002G275300 Sobic010G181300--Sobic006G238200 Sobic010G181300--Sobic007G108900 Sobic009G129300 Sobic009G129300 Sobic010G181300--Sobic009G129300 Sobic010G181300--Sobic001G289500 Sobic006G102000 Sobic006G102000 Sobic010G181300--Sobic006G102000 Sobic010G181300--Sobic002G370600 Sobic010G181300--Sobic003G398800 Sobic001G491000--Sobic006G238200 Sobic001G491000--Sobic010G181300 Sobic001G491000--Sobic001G100000 Sobic001G491000--Sobic002G275300 Sobic001G491000--Sobic001G289500 Sobic001G491000--Sobic009G129300 Sobic001G491000--Sobic002G370600 Sobic001G491000--Sobic009G237100 Sobic004G305800 Sobic004G305800 Sobic001G491000--Sobic004G305800 Sobic001G393300 Sobic001G393300 Sobic002G298800--Sobic001G393300 Sobic002G198300 Sobic002G198300 Sobic002G298800--Sobic002G198300 Sobic004G103300 Sobic004G103300 Sobic002G298800--Sobic004G103300 Sobic002G298800--Sobic007G103400 Sobic006G097500 Sobic006G097500 Sobic002G298800--Sobic006G097500 Sobic001G368600 Sobic001G368600 Sobic002G298800--Sobic001G368600 Sobic003G094100 Sobic003G094100 Sobic002G298800--Sobic003G094100 Sobic004G353100 Sobic004G353100 Sobic002G298800--Sobic004G353100 Sobic002G298800--Sobic002G275300 Sobic007G108900--Sobic003G094100 Sobic001G509200 Sobic001G509200 Sobic007G108900--Sobic001G509200 Sobic007G108900--Sobic004G103300 Sobic007G108900--Sobic001G393300 Sobic007G108900--Sobic006G102000 Sobic001G283100 Sobic001G283100 Sobic007G108900--Sobic001G283100 Sobic007G108900--Sobic010G181300 Sobic007G166300 Sobic007G166300 Sobic007G108900--Sobic007G166300 Sobic007G108900--Sobic002G298800 Sobic003G002300 Sobic003G002300 Sobic007G225500--Sobic003G002300 Sobic007G225500--Sobic010G035400 Sobic008G102000 Sobic008G102000 Sobic007G225500--Sobic008G102000 Sobic007G052400 Sobic007G052400 Sobic007G225500--Sobic007G052400 Sobic008G171300 Sobic008G171300 Sobic007G225500--Sobic008G171300 Sobic009G043000 Sobic009G043000 Sobic007G225500--Sobic009G043000 Sobic007G225500--Sobic002G275300 Sobic006G077400 Sobic006G077400 Sobic007G225500--Sobic006G077400 Sobic010G201700 Sobic010G201700 Sobic007G225500--Sobic010G201700 Sobic009G237000 Sobic009G237000 Sobic007G103400--Sobic009G237000 Sobic007G103400--Sobic002G298800 Sobic007G103400--Sobic004G353100 Sobic007G103400--Sobic010G035400 Sobic001G504400 Sobic001G504400 Sobic007G103400--Sobic001G504400 Sobic007G103400--Sobic003G306200 Sobic007G103400--Sobic002G198300 Sobic003G233700 Sobic003G233700 Sobic007G103400--Sobic003G233700 Sobic007G103400--Sobic002G275300 Sobic010G035400--Sobic007G103400 Sobic010G035400--Sobic007G225500 Sobic004G336200 Sobic004G336200 Sobic010G035400--Sobic004G336200 Sobic010G035400--Sobic004G353100 Sobic010G035400--Sobic009G237000 Sobic010G035400--Sobic002G275300 Sobic003G160800 Sobic003G160800 Sobic010G035400--Sobic003G160800 Sobic006G207800 Sobic006G207800 Sobic010G035400--Sobic006G207800 Sobic003G387100 Sobic003G387100 Sobic010G035400--Sobic003G387100 Sobic003G306200--Sobic007G103400 Sobic003G306200--Sobic003G398800 Sobic003G306200--Sobic002G275300 Sobic003G306200--Sobic002G298800 Sobic003G306200--Sobic002G198300 Sobic003G306200--Sobic010G035400 Sobic009G056700 Sobic009G056700 Sobic003G306200--Sobic009G056700 Sobic003G306200--Sobic006G238200 Sobic006G142600 Sobic006G142600 Sobic003G306200--Sobic006G142600
Octagon: transcription factors


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