Gene annotation
Transcriptome id Sobic.003G306200.5,Sobic.003G306200.3,Sobic.003G306200.4
Synonym Sb03g035470
Functional annotation hemimethylated DNA binding domain containing protein, expressed
UniProt A0A1W0VZR8 , A0A1B6Q6A3
Pfam PF02151 PF08755 PF08755 PF02151
Panther DB PTHR31350
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0003677DNA binding GO:0003677DNA binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G03390 : uvrB/uvrC motif-containing protein
RAP-DB (Rice) LOC_Os01g55880.1 : hemimethylated DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039949
Brachypodium KQK09891
Barley HORVU3Hr1G074210.63 , HORVU3Hr1G074210.2 , HORVU3Hr1G074210.38 , HORVU3Hr1G074210.35 , HORVU3Hr1G074210.36 , HORVU3Hr1G074210.31 , HORVU3Hr1G074210.30 , HORVU3Hr1G074210.33 , HORVU3Hr1G074210.32 , HORVU3Hr1G074210.57 , HORVU3Hr1G074210.56 , HORVU3Hr1G074210.55 , HORVU3Hr1G074210.54 , HORVU3Hr1G074210.53 , HORVU3Hr1G074210.52 , HORVU3Hr1G074210.51 , HORVU3Hr1G074210.50 , HORVU3Hr1G074210.64 , HORVU3Hr1G074210.62 , HORVU3Hr1G074210.59 , HORVU3Hr1G074210.60 , HORVU3Hr1G074210.61 , HORVU3Hr1G074210.39 , HORVU3Hr1G074210.49 , HORVU3Hr1G074210.28 , HORVU3Hr1G074210.29 , HORVU3Hr1G074210.48 , HORVU3Hr1G074210.24 , HORVU3Hr1G074210.44 , HORVU3Hr1G074210.45 , HORVU3Hr1G074210.46 , HORVU3Hr1G074210.47 , HORVU3Hr1G074210.40 , HORVU3Hr1G074210.41 , HORVU3Hr1G074210.42 , HORVU3Hr1G074210.43
Wheat TraesCS3A02G301600 , TraesCS3B02G335000
Populus -


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cDNA sequences
Sobic.003G306200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G103400 expressed protein -
2 Sobic.003G398800 expressed protein -
3 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
4 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
5 Sobic.002G198300 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.010G035400 expressed protein -
7 Sobic.009G056700 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed K01103: 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 3
8 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.006G142600 lipase class 3 family protein, putative, expressed -
10 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
11 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
12 Sobic.001G504400 expressed protein -
13 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
14 Sobic.007G108900 APE1, putative, expressed -
15 Sobic.003G233700 SET domain-containing protein, putative, expressed -
16 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
17 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.002G220900 expressed protein -
19 Sobic.009G132000 expressed protein -
20 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase


Gene co-expression network
sample Sobic003G306200 Sobic003G306200 Sobic007G103400 Sobic007G103400 Sobic003G306200--Sobic007G103400 Sobic003G398800 Sobic003G398800 Sobic003G306200--Sobic003G398800 Sobic002G275300 Sobic002G275300 Sobic003G306200--Sobic002G275300 Sobic002G298800 Sobic002G298800 Sobic003G306200--Sobic002G298800 Sobic002G198300 Sobic002G198300 Sobic003G306200--Sobic002G198300 Sobic010G035400 Sobic010G035400 Sobic003G306200--Sobic010G035400 Sobic009G056700 Sobic009G056700 Sobic003G306200--Sobic009G056700 Sobic006G238200 Sobic006G238200 Sobic003G306200--Sobic006G238200 Sobic006G142600 Sobic006G142600 Sobic003G306200--Sobic006G142600 Sobic009G237000 Sobic009G237000 Sobic007G103400--Sobic009G237000 Sobic007G103400--Sobic002G298800 Sobic004G353100 Sobic004G353100 Sobic007G103400--Sobic004G353100 Sobic007G103400--Sobic010G035400 Sobic001G504400 Sobic001G504400 Sobic007G103400--Sobic001G504400 Sobic007G103400--Sobic003G306200 Sobic007G103400--Sobic002G198300 Sobic003G233700 Sobic003G233700 Sobic007G103400--Sobic003G233700 Sobic007G103400--Sobic002G275300 Sobic003G398800--Sobic006G238200 Sobic003G398800--Sobic003G306200 Sobic003G398800--Sobic009G056700 Sobic007G009200 Sobic007G009200 Sobic003G398800--Sobic007G009200 Sobic003G398800--Sobic007G103400 Sobic009G129300 Sobic009G129300 Sobic003G398800--Sobic009G129300 Sobic002G220900 Sobic002G220900 Sobic003G398800--Sobic002G220900 Sobic003G431700 Sobic003G431700 Sobic003G398800--Sobic003G431700 Sobic001G491000 Sobic001G491000 Sobic003G398800--Sobic001G491000 Sobic002G275300--Sobic006G238200 Sobic010G181300 Sobic010G181300 Sobic002G275300--Sobic010G181300 Sobic002G275300--Sobic001G491000 Sobic002G275300--Sobic002G298800 Sobic007G108900 Sobic007G108900 Sobic002G275300--Sobic007G108900 Sobic007G225500 Sobic007G225500 Sobic002G275300--Sobic007G225500 Sobic002G275300--Sobic007G103400 Sobic002G275300--Sobic010G035400 Sobic002G275300--Sobic003G306200 Sobic001G393300 Sobic001G393300 Sobic002G298800--Sobic001G393300 Sobic002G298800--Sobic002G198300 Sobic004G103300 Sobic004G103300 Sobic002G298800--Sobic004G103300 Sobic002G298800--Sobic007G103400 Sobic006G097500 Sobic006G097500 Sobic002G298800--Sobic006G097500 Sobic001G368600 Sobic001G368600 Sobic002G298800--Sobic001G368600 Sobic003G094100 Sobic003G094100 Sobic002G298800--Sobic003G094100 Sobic002G298800--Sobic004G353100 Sobic002G298800--Sobic002G275300 Sobic002G198300--Sobic002G298800 Sobic002G198300--Sobic001G393300 Sobic002G198300--Sobic007G103400 Sobic002G198300--Sobic001G368600 Sobic010G125833 Sobic010G125833 Sobic002G198300--Sobic010G125833 Sobic002G198300--Sobic001G504400 Sobic001G378100 Sobic001G378100 Sobic002G198300--Sobic001G378100 Sobic002G198300--Sobic003G306200 Sobic001G536700 Sobic001G536700 Sobic002G198300--Sobic001G536700 Sobic010G035400--Sobic007G103400 Sobic010G035400--Sobic007G225500 Sobic004G336200 Sobic004G336200 Sobic010G035400--Sobic004G336200 Sobic010G035400--Sobic004G353100 Sobic010G035400--Sobic009G237000 Sobic010G035400--Sobic002G275300 Sobic003G160800 Sobic003G160800 Sobic010G035400--Sobic003G160800 Sobic006G207800 Sobic006G207800 Sobic010G035400--Sobic006G207800 Sobic003G387100 Sobic003G387100 Sobic010G035400--Sobic003G387100 Sobic009G056700--Sobic003G398800 Sobic009G056700--Sobic003G431700 Sobic002G112400 Sobic002G112400 Sobic009G056700--Sobic002G112400 Sobic009G056700--Sobic007G103400 Sobic009G056700--Sobic003G306200 Sobic008G006100 Sobic008G006100 Sobic009G056700--Sobic008G006100 Sobic009G056700--Sobic002G275300 Sobic009G056700--Sobic002G298800 Sobic001G128600 Sobic001G128600 Sobic009G056700--Sobic001G128600 Sobic006G238200--Sobic001G491000 Sobic006G238200--Sobic002G275300 Sobic006G238200--Sobic010G181300 Sobic001G100000 Sobic001G100000 Sobic006G238200--Sobic001G100000 Sobic009G237100 Sobic009G237100 Sobic006G238200--Sobic009G237100 Sobic006G238200--Sobic003G398800 Sobic001G289500 Sobic001G289500 Sobic006G238200--Sobic001G289500 Sobic002G370600 Sobic002G370600 Sobic006G238200--Sobic002G370600 Sobic006G238200--Sobic007G225500 Sobic010G043800 Sobic010G043800 Sobic006G142600--Sobic010G043800 Sobic006G142600--Sobic003G306200 Sobic006G142600--Sobic007G103400 Sobic006G142600--Sobic007G108900 Sobic007G136200 Sobic007G136200 Sobic006G142600--Sobic007G136200 Sobic001G169900 Sobic001G169900 Sobic006G142600--Sobic001G169900 Sobic006G158100 Sobic006G158100 Sobic006G142600--Sobic006G158100 Sobic006G142600--Sobic002G198300 Sobic006G142600--Sobic003G094100
Octagon: transcription factors


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