Gene annotation
Transcriptome id Sobic.009G132000.5,Sobic.009G132000.2,Sobic.009G132000.1,Sobic.009G132000.3,Sobic.009G132000.6,Sobic.009G132000.4
Synonym Sb09g019840, RPH1
Functional annotation expressed protein
UniProt A0A1Z5R3L6 , C5YXP1
Pfam -
Panther DB PTHR36359 PTHR36359:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G48070 : resistance to phytophthora 1
RAP-DB (Rice) LOC_Os05g33520.1 : expressed protein
MaizeGDB (Corn) Zm00025a043655
Brachypodium KQK06336 , KQK06335
Barley HORVU1Hr1G061230.4 , HORVU1Hr1G061230.1 , HORVU1Hr1G061230.3
Wheat TraesCS1A02G252700 , TraesCS1A02G252700 , TraesCS1B02G265300 , TraesCS1B02G265300 , TraesCS1D02G252400 , TraesCS1D02G252400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G005000 expressed protein -
2 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
3 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
4 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.007G108900 APE1, putative, expressed -
6 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
7 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
8 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
9 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
10 Sobic.006G235350 - -
11 Sobic.007G103400 expressed protein -
12 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
13 Sobic.001G289500 kinase, pfkB family, putative, expressed -
14 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
15 Sobic.001G536700 expressed protein -
16 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
17 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
18 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.009G133700 expressed protein -
20 Sobic.007G087100 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic009G132000 Sobic009G132000 Sobic003G005000 Sobic003G005000 Sobic009G132000--Sobic003G005000 Sobic007G166300 Sobic007G166300 Sobic009G132000--Sobic007G166300 Sobic004G353100 Sobic004G353100 Sobic009G132000--Sobic004G353100 Sobic003G094100 Sobic003G094100 Sobic009G132000--Sobic003G094100 Sobic007G108900 Sobic007G108900 Sobic009G132000--Sobic007G108900 Sobic004G103300 Sobic004G103300 Sobic009G132000--Sobic004G103300 Sobic001G509200 Sobic001G509200 Sobic009G132000--Sobic001G509200 Sobic009G170200 Sobic009G170200 Sobic009G132000--Sobic009G170200 Sobic007G157300 Sobic007G157300 Sobic009G132000--Sobic007G157300 Sobic001G289500 Sobic001G289500 Sobic003G005000--Sobic001G289500 Sobic003G005000--Sobic003G094100 Sobic003G005000--Sobic009G132000 Sobic002G306800 Sobic002G306800 Sobic003G005000--Sobic002G306800 Sobic003G005000--Sobic007G108900 Sobic010G039500 Sobic010G039500 Sobic003G005000--Sobic010G039500 Sobic009G133700 Sobic009G133700 Sobic003G005000--Sobic009G133700 Sobic003G005000--Sobic007G157300 Sobic004G035900 Sobic004G035900 Sobic003G005000--Sobic004G035900 Sobic005G028800 Sobic005G028800 Sobic007G166300--Sobic005G028800 Sobic001G393300 Sobic001G393300 Sobic007G166300--Sobic001G393300 Sobic007G166300--Sobic004G103300 Sobic007G166300--Sobic001G509200 Sobic001G015200 Sobic001G015200 Sobic007G166300--Sobic001G015200 Sobic007G124500 Sobic007G124500 Sobic007G166300--Sobic007G124500 Sobic007G135800 Sobic007G135800 Sobic007G166300--Sobic007G135800 Sobic007G166300--Sobic007G108900 Sobic002G298800 Sobic002G298800 Sobic007G166300--Sobic002G298800 Sobic007G103400 Sobic007G103400 Sobic004G353100--Sobic007G103400 Sobic009G237000 Sobic009G237000 Sobic004G353100--Sobic009G237000 Sobic002G133900 Sobic002G133900 Sobic004G353100--Sobic002G133900 Sobic004G353100--Sobic002G298800 Sobic010G035400 Sobic010G035400 Sobic004G353100--Sobic010G035400 Sobic003G070900 Sobic003G070900 Sobic004G353100--Sobic003G070900 Sobic003G233700 Sobic003G233700 Sobic004G353100--Sobic003G233700 Sobic004G353100--Sobic009G132000 Sobic004G353100--Sobic009G170200 Sobic003G094100--Sobic007G108900 Sobic003G094100--Sobic001G509200 Sobic003G094100--Sobic007G135800 Sobic003G094100--Sobic001G393300 Sobic001G283100 Sobic001G283100 Sobic003G094100--Sobic001G283100 Sobic003G094100--Sobic007G157300 Sobic003G094100--Sobic004G103300 Sobic001G180200 Sobic001G180200 Sobic003G094100--Sobic001G180200 Sobic003G094100--Sobic002G298800 Sobic007G108900--Sobic003G094100 Sobic007G108900--Sobic001G509200 Sobic007G108900--Sobic004G103300 Sobic007G108900--Sobic001G393300 Sobic006G102000 Sobic006G102000 Sobic007G108900--Sobic006G102000 Sobic007G108900--Sobic001G283100 Sobic010G181300 Sobic010G181300 Sobic007G108900--Sobic010G181300 Sobic007G108900--Sobic007G166300 Sobic007G108900--Sobic002G298800 Sobic004G103300--Sobic001G509200 Sobic004G103300--Sobic007G166300 Sobic004G103300--Sobic001G393300 Sobic001G368600 Sobic001G368600 Sobic004G103300--Sobic001G368600 Sobic004G103300--Sobic002G298800 Sobic004G103300--Sobic007G108900 Sobic006G097500 Sobic006G097500 Sobic004G103300--Sobic006G097500 Sobic004G103300--Sobic005G028800 Sobic004G103300--Sobic007G135800 Sobic001G509200--Sobic007G135800 Sobic001G509200--Sobic004G103300 Sobic001G509200--Sobic001G393300 Sobic001G509200--Sobic007G108900 Sobic001G509200--Sobic007G166300 Sobic001G509200--Sobic003G094100 Sobic006G213700 Sobic006G213700 Sobic001G509200--Sobic006G213700 Sobic006G090100 Sobic006G090100 Sobic001G509200--Sobic006G090100 Sobic009G073900 Sobic009G073900 Sobic001G509200--Sobic009G073900 Sobic009G170200--Sobic003G070900 Sobic006G232600 Sobic006G232600 Sobic009G170200--Sobic006G232600 Sobic007G087100 Sobic007G087100 Sobic009G170200--Sobic007G087100 Sobic009G170200--Sobic004G103300 Sobic009G170200--Sobic002G133900 Sobic001G077300 Sobic001G077300 Sobic009G170200--Sobic001G077300 Sobic009G170200--Sobic004G353100 Sobic001G378100 Sobic001G378100 Sobic009G170200--Sobic001G378100 Sobic009G170200--Sobic007G103400 Sobic007G157300--Sobic009G133700 Sobic003G341300 Sobic003G341300 Sobic007G157300--Sobic003G341300 Sobic007G157300--Sobic003G094100 Sobic007G157300--Sobic001G283100 Sobic007G157300--Sobic007G108900 Sobic007G157300--Sobic007G135800 Sobic007G157300--Sobic001G393300 Sobic007G157300--Sobic001G509200 Sobic003G409700 Sobic003G409700 Sobic007G157300--Sobic003G409700
Octagon: transcription factors


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