Gene annotation
Transcriptome id Sobic.006G235350.1,Sobic.006G235350.2,Sobic.006G235350.3
Synonym -
Functional annotation -
UniProt A0A1Z5RF93 , A0A1Z5RFY6 , A0A1Z5RF98
Pfam -
Panther DB PTHR33471 PTHR33471:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G21960 : -
RAP-DB (Rice) LOC_Os04g54640.1 : peptidase, cysteine peptidase active site, putative, expressed
MaizeGDB (Corn) Zm00025a009592
Brachypodium KQJ84873
Barley HORVU2Hr1G115710.5 , HORVU2Hr1G115710.4 , HORVU2Hr1G115710.7 , HORVU2Hr1G115710.6 , HORVU2Hr1G115710.3 , HORVU2Hr1G115710.2
Wheat TraesCS2D02G525700 , TraesCS2A02G523600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
2 Sobic.004G202200 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
3 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
4 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
5 Sobic.003G005000 expressed protein -
6 Sobic.001G289500 kinase, pfkB family, putative, expressed -
7 Sobic.002G223700 OsRhmbd15 - Putative Rhomboid homologue, expressed -
8 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
9 Sobic.009G132000 expressed protein -
10 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
11 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
12 Sobic.003G409700 rieske domain containing protein, expressed -
13 Sobic.008G064500 TPR domain protein, putative, expressed -
14 Sobic.004G303200 cytochrome b561, putative, expressed K08360: cytochrome b-561
15 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
16 Sobic.007G108900 APE1, putative, expressed -
17 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
18 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
19 Sobic.009G133700 expressed protein -
20 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic006G235350 Sobic006G235350 Sobic006G140500 Sobic006G140500 Sobic006G235350--Sobic006G140500 Sobic004G202200 Sobic004G202200 Sobic006G235350--Sobic004G202200 Sobic007G166300 Sobic007G166300 Sobic006G235350--Sobic007G166300 Sobic005G028800 Sobic005G028800 Sobic006G235350--Sobic005G028800 Sobic003G005000 Sobic003G005000 Sobic006G235350--Sobic003G005000 Sobic001G289500 Sobic001G289500 Sobic006G235350--Sobic001G289500 Sobic002G223700 Sobic002G223700 Sobic006G235350--Sobic002G223700 Sobic001G015200 Sobic001G015200 Sobic006G235350--Sobic001G015200 Sobic009G132000 Sobic009G132000 Sobic006G235350--Sobic009G132000 Sobic008G088821 Sobic008G088821 Sobic006G140500--Sobic008G088821 Sobic006G140500--Sobic006G235350 Sobic006G140500--Sobic001G015200 Sobic001G029600 Sobic001G029600 Sobic006G140500--Sobic001G029600 Sobic009G119300 Sobic009G119300 Sobic006G140500--Sobic009G119300 Sobic004G028300 Sobic004G028300 Sobic006G140500--Sobic004G028300 Sobic006G140500--Sobic004G202200 Sobic006G140500--Sobic005G028800 Sobic006G140500--Sobic007G166300 Sobic004G202200--Sobic001G289500 Sobic004G202200--Sobic006G235350 Sobic004G202200--Sobic006G140500 Sobic009G133700 Sobic009G133700 Sobic004G202200--Sobic009G133700 Sobic004G202200--Sobic001G029600 Sobic003G094100 Sobic003G094100 Sobic004G202200--Sobic003G094100 Sobic004G202200--Sobic003G005000 Sobic004G202200--Sobic001G015200 Sobic007G181400 Sobic007G181400 Sobic004G202200--Sobic007G181400 Sobic007G166300--Sobic005G028800 Sobic001G393300 Sobic001G393300 Sobic007G166300--Sobic001G393300 Sobic004G103300 Sobic004G103300 Sobic007G166300--Sobic004G103300 Sobic001G509200 Sobic001G509200 Sobic007G166300--Sobic001G509200 Sobic007G166300--Sobic001G015200 Sobic007G124500 Sobic007G124500 Sobic007G166300--Sobic007G124500 Sobic007G135800 Sobic007G135800 Sobic007G166300--Sobic007G135800 Sobic007G108900 Sobic007G108900 Sobic007G166300--Sobic007G108900 Sobic002G298800 Sobic002G298800 Sobic007G166300--Sobic002G298800 Sobic005G028800--Sobic007G166300 Sobic005G028800--Sobic004G103300 Sobic005G028800--Sobic001G509200 Sobic004G124400 Sobic004G124400 Sobic005G028800--Sobic004G124400 Sobic005G028800--Sobic001G015200 Sobic005G028800--Sobic007G135800 Sobic010G231500 Sobic010G231500 Sobic005G028800--Sobic010G231500 Sobic005G028800--Sobic001G393300 Sobic005G028800--Sobic007G124500 Sobic003G005000--Sobic001G289500 Sobic003G005000--Sobic003G094100 Sobic003G005000--Sobic009G132000 Sobic002G306800 Sobic002G306800 Sobic003G005000--Sobic002G306800 Sobic003G005000--Sobic007G108900 Sobic010G039500 Sobic010G039500 Sobic003G005000--Sobic010G039500 Sobic003G005000--Sobic009G133700 Sobic007G157300 Sobic007G157300 Sobic003G005000--Sobic007G157300 Sobic004G035900 Sobic004G035900 Sobic003G005000--Sobic004G035900 Sobic001G289500--Sobic003G005000 Sobic001G491000 Sobic001G491000 Sobic001G289500--Sobic001G491000 Sobic001G289500--Sobic004G202200 Sobic006G238200 Sobic006G238200 Sobic001G289500--Sobic006G238200 Sobic006G102000 Sobic006G102000 Sobic001G289500--Sobic006G102000 Sobic010G181300 Sobic010G181300 Sobic001G289500--Sobic010G181300 Sobic001G289500--Sobic007G108900 Sobic001G289500--Sobic003G094100 Sobic002G275300 Sobic002G275300 Sobic001G289500--Sobic002G275300 Sobic002G223700--Sobic006G235350 Sobic002G223700--Sobic006G102000 Sobic010G035400 Sobic010G035400 Sobic002G223700--Sobic010G035400 Sobic002G223700--Sobic007G108900 Sobic002G223700--Sobic002G275300 Sobic002G223700--Sobic003G005000 Sobic002G223700--Sobic009G132000 Sobic007G225500 Sobic007G225500 Sobic002G223700--Sobic007G225500 Sobic007G103400 Sobic007G103400 Sobic002G223700--Sobic007G103400 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic003G103300 Sobic003G103300 Sobic001G015200--Sobic003G103300 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G015200--Sobic001G509200 Sobic001G015200--Sobic001G393300 Sobic001G015200--Sobic009G119300 Sobic010G101000 Sobic010G101000 Sobic001G015200--Sobic010G101000 Sobic009G132000--Sobic003G005000 Sobic009G132000--Sobic007G166300 Sobic004G353100 Sobic004G353100 Sobic009G132000--Sobic004G353100 Sobic009G132000--Sobic003G094100 Sobic009G132000--Sobic007G108900 Sobic009G132000--Sobic004G103300 Sobic009G132000--Sobic001G509200 Sobic009G170200 Sobic009G170200 Sobic009G132000--Sobic009G170200 Sobic009G132000--Sobic007G157300
Octagon: transcription factors


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