Gene annotation
Transcriptome id Sobic.002G223700.2,Sobic.002G223700.1
Synonym ATRBL10, Sb02g026450, RBL10
Functional annotation OsRhmbd15 - Putative Rhomboid homologue, expressed
UniProt A0A1W0W5F0 , C5X293
Pfam PF01694
Panther DB PTHR22936 PTHR22936:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT1G25290 : RHOMBOID-like protein 10
RAP-DB (Rice) LOC_Os09g28100.1 : OsRhmbd15 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a014030
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G235350 - -
2 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
3 Sobic.010G035400 expressed protein -
4 Sobic.007G108900 APE1, putative, expressed -
5 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
6 Sobic.003G005000 expressed protein -
7 Sobic.009G132000 expressed protein -
8 Sobic.007G225500 expressed protein -
9 Sobic.007G103400 expressed protein -
10 Sobic.001G289500 kinase, pfkB family, putative, expressed -
11 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
12 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
13 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
15 Sobic.004G303200 cytochrome b561, putative, expressed K08360: cytochrome b-561
16 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
17 Sobic.004G202200 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
18 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
19 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
20 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase


Gene co-expression network
sample Sobic002G223700 Sobic002G223700 Sobic006G235350 Sobic006G235350 Sobic002G223700--Sobic006G235350 Sobic006G102000 Sobic006G102000 Sobic002G223700--Sobic006G102000 Sobic010G035400 Sobic010G035400 Sobic002G223700--Sobic010G035400 Sobic007G108900 Sobic007G108900 Sobic002G223700--Sobic007G108900 Sobic002G275300 Sobic002G275300 Sobic002G223700--Sobic002G275300 Sobic003G005000 Sobic003G005000 Sobic002G223700--Sobic003G005000 Sobic009G132000 Sobic009G132000 Sobic002G223700--Sobic009G132000 Sobic007G225500 Sobic007G225500 Sobic002G223700--Sobic007G225500 Sobic007G103400 Sobic007G103400 Sobic002G223700--Sobic007G103400 Sobic006G140500 Sobic006G140500 Sobic006G235350--Sobic006G140500 Sobic004G202200 Sobic004G202200 Sobic006G235350--Sobic004G202200 Sobic007G166300 Sobic007G166300 Sobic006G235350--Sobic007G166300 Sobic005G028800 Sobic005G028800 Sobic006G235350--Sobic005G028800 Sobic006G235350--Sobic003G005000 Sobic001G289500 Sobic001G289500 Sobic006G235350--Sobic001G289500 Sobic006G235350--Sobic002G223700 Sobic001G015200 Sobic001G015200 Sobic006G235350--Sobic001G015200 Sobic006G235350--Sobic009G132000 Sobic006G102000--Sobic007G108900 Sobic009G237000 Sobic009G237000 Sobic006G102000--Sobic009G237000 Sobic006G102000--Sobic001G289500 Sobic003G094100 Sobic003G094100 Sobic006G102000--Sobic003G094100 Sobic010G181300 Sobic010G181300 Sobic006G102000--Sobic010G181300 Sobic006G102000--Sobic002G275300 Sobic001G491000 Sobic001G491000 Sobic006G102000--Sobic001G491000 Sobic006G207800 Sobic006G207800 Sobic006G102000--Sobic006G207800 Sobic004G303200 Sobic004G303200 Sobic006G102000--Sobic004G303200 Sobic010G035400--Sobic007G103400 Sobic010G035400--Sobic007G225500 Sobic004G336200 Sobic004G336200 Sobic010G035400--Sobic004G336200 Sobic004G353100 Sobic004G353100 Sobic010G035400--Sobic004G353100 Sobic010G035400--Sobic009G237000 Sobic010G035400--Sobic002G275300 Sobic003G160800 Sobic003G160800 Sobic010G035400--Sobic003G160800 Sobic010G035400--Sobic006G207800 Sobic003G387100 Sobic003G387100 Sobic010G035400--Sobic003G387100 Sobic007G108900--Sobic003G094100 Sobic001G509200 Sobic001G509200 Sobic007G108900--Sobic001G509200 Sobic004G103300 Sobic004G103300 Sobic007G108900--Sobic004G103300 Sobic001G393300 Sobic001G393300 Sobic007G108900--Sobic001G393300 Sobic007G108900--Sobic006G102000 Sobic001G283100 Sobic001G283100 Sobic007G108900--Sobic001G283100 Sobic007G108900--Sobic010G181300 Sobic007G108900--Sobic007G166300 Sobic002G298800 Sobic002G298800 Sobic007G108900--Sobic002G298800 Sobic006G238200 Sobic006G238200 Sobic002G275300--Sobic006G238200 Sobic002G275300--Sobic010G181300 Sobic002G275300--Sobic001G491000 Sobic002G275300--Sobic002G298800 Sobic002G275300--Sobic007G108900 Sobic002G275300--Sobic007G225500 Sobic002G275300--Sobic007G103400 Sobic002G275300--Sobic010G035400 Sobic003G306200 Sobic003G306200 Sobic002G275300--Sobic003G306200 Sobic003G005000--Sobic001G289500 Sobic003G005000--Sobic003G094100 Sobic003G005000--Sobic009G132000 Sobic002G306800 Sobic002G306800 Sobic003G005000--Sobic002G306800 Sobic003G005000--Sobic007G108900 Sobic010G039500 Sobic010G039500 Sobic003G005000--Sobic010G039500 Sobic009G133700 Sobic009G133700 Sobic003G005000--Sobic009G133700 Sobic007G157300 Sobic007G157300 Sobic003G005000--Sobic007G157300 Sobic004G035900 Sobic004G035900 Sobic003G005000--Sobic004G035900 Sobic009G132000--Sobic003G005000 Sobic009G132000--Sobic007G166300 Sobic009G132000--Sobic004G353100 Sobic009G132000--Sobic003G094100 Sobic009G132000--Sobic007G108900 Sobic009G132000--Sobic004G103300 Sobic009G132000--Sobic001G509200 Sobic009G170200 Sobic009G170200 Sobic009G132000--Sobic009G170200 Sobic009G132000--Sobic007G157300 Sobic003G002300 Sobic003G002300 Sobic007G225500--Sobic003G002300 Sobic007G225500--Sobic010G035400 Sobic008G102000 Sobic008G102000 Sobic007G225500--Sobic008G102000 Sobic007G052400 Sobic007G052400 Sobic007G225500--Sobic007G052400 Sobic008G171300 Sobic008G171300 Sobic007G225500--Sobic008G171300 Sobic009G043000 Sobic009G043000 Sobic007G225500--Sobic009G043000 Sobic007G225500--Sobic002G275300 Sobic006G077400 Sobic006G077400 Sobic007G225500--Sobic006G077400 Sobic010G201700 Sobic010G201700 Sobic007G225500--Sobic010G201700 Sobic007G103400--Sobic009G237000 Sobic007G103400--Sobic002G298800 Sobic007G103400--Sobic004G353100 Sobic007G103400--Sobic010G035400 Sobic001G504400 Sobic001G504400 Sobic007G103400--Sobic001G504400 Sobic007G103400--Sobic003G306200 Sobic002G198300 Sobic002G198300 Sobic007G103400--Sobic002G198300 Sobic003G233700 Sobic003G233700 Sobic007G103400--Sobic003G233700 Sobic007G103400--Sobic002G275300
Octagon: transcription factors


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