Gene annotation
Transcriptome id Sobic.003G005000.3
Synonym Sb03g000620
Functional annotation expressed protein
UniProt A0A1B6Q0L3
Pfam -
Panther DB PTHR12446
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42070 : -
RAP-DB (Rice) LOC_Os01g13390.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G005000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G289500 kinase, pfkB family, putative, expressed -
2 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.009G132000 expressed protein -
4 Sobic.002G306800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
5 Sobic.007G108900 APE1, putative, expressed -
6 Sobic.010G039500 genetic modifier, putative, expressed -
7 Sobic.009G133700 expressed protein -
8 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
9 Sobic.004G035900 expressed protein -
10 Sobic.006G235350 - -
11 Sobic.004G202200 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
12 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
13 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
14 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
15 Sobic.003G409700 rieske domain containing protein, expressed -
16 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.003G228300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
18 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
19 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
20 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase


Gene co-expression network
sample Sobic003G005000 Sobic003G005000 Sobic001G289500 Sobic001G289500 Sobic003G005000--Sobic001G289500 Sobic003G094100 Sobic003G094100 Sobic003G005000--Sobic003G094100 Sobic009G132000 Sobic009G132000 Sobic003G005000--Sobic009G132000 Sobic002G306800 Sobic002G306800 Sobic003G005000--Sobic002G306800 Sobic007G108900 Sobic007G108900 Sobic003G005000--Sobic007G108900 Sobic010G039500 Sobic010G039500 Sobic003G005000--Sobic010G039500 Sobic009G133700 Sobic009G133700 Sobic003G005000--Sobic009G133700 Sobic007G157300 Sobic007G157300 Sobic003G005000--Sobic007G157300 Sobic004G035900 Sobic004G035900 Sobic003G005000--Sobic004G035900 Sobic001G289500--Sobic003G005000 Sobic001G491000 Sobic001G491000 Sobic001G289500--Sobic001G491000 Sobic004G202200 Sobic004G202200 Sobic001G289500--Sobic004G202200 Sobic006G238200 Sobic006G238200 Sobic001G289500--Sobic006G238200 Sobic006G102000 Sobic006G102000 Sobic001G289500--Sobic006G102000 Sobic010G181300 Sobic010G181300 Sobic001G289500--Sobic010G181300 Sobic001G289500--Sobic007G108900 Sobic001G289500--Sobic003G094100 Sobic002G275300 Sobic002G275300 Sobic001G289500--Sobic002G275300 Sobic003G094100--Sobic007G108900 Sobic001G509200 Sobic001G509200 Sobic003G094100--Sobic001G509200 Sobic007G135800 Sobic007G135800 Sobic003G094100--Sobic007G135800 Sobic001G393300 Sobic001G393300 Sobic003G094100--Sobic001G393300 Sobic001G283100 Sobic001G283100 Sobic003G094100--Sobic001G283100 Sobic003G094100--Sobic007G157300 Sobic004G103300 Sobic004G103300 Sobic003G094100--Sobic004G103300 Sobic001G180200 Sobic001G180200 Sobic003G094100--Sobic001G180200 Sobic002G298800 Sobic002G298800 Sobic003G094100--Sobic002G298800 Sobic009G132000--Sobic003G005000 Sobic007G166300 Sobic007G166300 Sobic009G132000--Sobic007G166300 Sobic004G353100 Sobic004G353100 Sobic009G132000--Sobic004G353100 Sobic009G132000--Sobic003G094100 Sobic009G132000--Sobic007G108900 Sobic009G132000--Sobic004G103300 Sobic009G132000--Sobic001G509200 Sobic009G170200 Sobic009G170200 Sobic009G132000--Sobic009G170200 Sobic009G132000--Sobic007G157300 Sobic002G306800--Sobic003G005000 Sobic002G306800--Sobic001G289500 Sobic003G341300 Sobic003G341300 Sobic002G306800--Sobic003G341300 Sobic002G306800--Sobic007G157300 Sobic002G382700 Sobic002G382700 Sobic002G306800--Sobic002G382700 Sobic002G306800--Sobic003G094100 Sobic002G306800--Sobic001G283100 Sobic002G306800--Sobic004G035900 Sobic002G306800--Sobic004G202200 Sobic007G108900--Sobic003G094100 Sobic007G108900--Sobic001G509200 Sobic007G108900--Sobic004G103300 Sobic007G108900--Sobic001G393300 Sobic007G108900--Sobic006G102000 Sobic007G108900--Sobic001G283100 Sobic007G108900--Sobic010G181300 Sobic007G108900--Sobic007G166300 Sobic007G108900--Sobic002G298800 Sobic003G127800 Sobic003G127800 Sobic010G039500--Sobic003G127800 Sobic010G039500--Sobic003G005000 Sobic003G367500 Sobic003G367500 Sobic010G039500--Sobic003G367500 Sobic003G398800 Sobic003G398800 Sobic010G039500--Sobic003G398800 Sobic005G101300 Sobic005G101300 Sobic010G039500--Sobic005G101300 Sobic003G024300 Sobic003G024300 Sobic010G039500--Sobic003G024300 Sobic007G161500 Sobic007G161500 Sobic010G039500--Sobic007G161500 Sobic010G039500--Sobic001G491000 Sobic010G039500--Sobic006G238200 Sobic009G133700--Sobic007G157300 Sobic003G409700 Sobic003G409700 Sobic009G133700--Sobic003G409700 Sobic009G133700--Sobic003G094100 Sobic009G133700--Sobic003G341300 Sobic002G047400 Sobic002G047400 Sobic009G133700--Sobic002G047400 Sobic009G133700--Sobic007G135800 Sobic009G133700--Sobic003G005000 Sobic003G228300 Sobic003G228300 Sobic009G133700--Sobic003G228300 Sobic009G133700--Sobic004G202200 Sobic007G157300--Sobic009G133700 Sobic007G157300--Sobic003G341300 Sobic007G157300--Sobic003G094100 Sobic007G157300--Sobic001G283100 Sobic007G157300--Sobic007G108900 Sobic007G157300--Sobic007G135800 Sobic007G157300--Sobic001G393300 Sobic007G157300--Sobic001G509200 Sobic007G157300--Sobic003G409700 Sobic004G035900--Sobic003G005000 Sobic004G035900--Sobic001G283100 Sobic001G485100 Sobic001G485100 Sobic004G035900--Sobic001G485100 Sobic003G003450 Sobic003G003450 Sobic004G035900--Sobic003G003450 Sobic001G331600 Sobic001G331600 Sobic004G035900--Sobic001G331600 Sobic004G035900--Sobic007G157300 Sobic008G149100 Sobic008G149100 Sobic004G035900--Sobic008G149100 Sobic001G015200 Sobic001G015200 Sobic004G035900--Sobic001G015200 Sobic004G035900--Sobic003G228300
Octagon: transcription factors


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