Gene annotation
Transcriptome id Sobic.006G140500.1,Sobic.006G140500.2,Sobic.006G140500.3
Synonym Sb06g021960
Functional annotation photosystem-II repair protein, putative, expressed
UniProt A0A1B6PLX5 , A0A1Z5REU6 , C5YBV9
Pfam PF11998
Panther DB PTHR35498 PTHR35498:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G28740 : -
RAP-DB (Rice) LOC_Os04g42800.2,LOC_Os04g42800.1 : photosystem-II repair protein, putative, expressed
MaizeGDB (Corn) Zm00025a010745
Brachypodium PNT61436 , KQJ83474 , PNT61435 , KQJ83472 , KQJ83473
Barley HORVU2Hr1G087730.9 , HORVU2Hr1G087730.8 , HORVU2Hr1G087730.3 , HORVU2Hr1G087730.2 , HORVU2Hr1G087730.1 , HORVU2Hr1G087730.7 , HORVU2Hr1G087730.6 , HORVU2Hr1G087730.5 , HORVU2Hr1G087730.10
Wheat TraesCS2B02G380000 , TraesCS2D02G359700 , TraesCS2D02G359700 , TraesCS2A02G362200 , TraesCS2A02G362200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
2 Sobic.006G235350 - -
3 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
4 Sobic.001G029600 -(PubMedID : 26465154)@expressed protein -
5 Sobic.009G119300 peptide chain release factor 2, putative, expressed -
6 Sobic.004G028300 expressed protein -
7 Sobic.004G202200 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
8 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
9 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
10 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
11 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
12 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
13 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
14 Sobic.003G005000 expressed protein -
15 Sobic.001G289500 kinase, pfkB family, putative, expressed -
16 Sobic.003G419900 photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed K08903: photosystem II 13kDa protein
17 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
18 Sobic.008G064500 TPR domain protein, putative, expressed -
19 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
20 Sobic.007G087100 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic006G140500 Sobic006G140500 Sobic008G088821 Sobic008G088821 Sobic006G140500--Sobic008G088821 Sobic006G235350 Sobic006G235350 Sobic006G140500--Sobic006G235350 Sobic001G015200 Sobic001G015200 Sobic006G140500--Sobic001G015200 Sobic001G029600 Sobic001G029600 Sobic006G140500--Sobic001G029600 Sobic009G119300 Sobic009G119300 Sobic006G140500--Sobic009G119300 Sobic004G028300 Sobic004G028300 Sobic006G140500--Sobic004G028300 Sobic004G202200 Sobic004G202200 Sobic006G140500--Sobic004G202200 Sobic005G028800 Sobic005G028800 Sobic006G140500--Sobic005G028800 Sobic007G166300 Sobic007G166300 Sobic006G140500--Sobic007G166300 Sobic008G088821--Sobic001G015200 Sobic008G088821--Sobic006G140500 Sobic008G088821--Sobic004G028300 Sobic008G088821--Sobic009G119300 Sobic003G103300 Sobic003G103300 Sobic008G088821--Sobic003G103300 Sobic001G018000 Sobic001G018000 Sobic008G088821--Sobic001G018000 Sobic004G268400 Sobic004G268400 Sobic008G088821--Sobic004G268400 Sobic010G101000 Sobic010G101000 Sobic008G088821--Sobic010G101000 Sobic002G030900 Sobic002G030900 Sobic008G088821--Sobic002G030900 Sobic006G235350--Sobic006G140500 Sobic006G235350--Sobic004G202200 Sobic006G235350--Sobic007G166300 Sobic006G235350--Sobic005G028800 Sobic003G005000 Sobic003G005000 Sobic006G235350--Sobic003G005000 Sobic001G289500 Sobic001G289500 Sobic006G235350--Sobic001G289500 Sobic002G223700 Sobic002G223700 Sobic006G235350--Sobic002G223700 Sobic006G235350--Sobic001G015200 Sobic009G132000 Sobic009G132000 Sobic006G235350--Sobic009G132000 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic001G015200--Sobic003G103300 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G509200 Sobic001G509200 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic001G015200--Sobic009G119300 Sobic001G015200--Sobic010G101000 Sobic001G029600--Sobic006G140500 Sobic001G029600--Sobic004G202200 Sobic004G267700 Sobic004G267700 Sobic001G029600--Sobic004G267700 Sobic001G029600--Sobic009G119300 Sobic001G029600--Sobic004G268400 Sobic001G029600--Sobic008G088821 Sobic003G380200 Sobic003G380200 Sobic001G029600--Sobic003G380200 Sobic009G133700 Sobic009G133700 Sobic001G029600--Sobic009G133700 Sobic001G029600--Sobic001G015200 Sobic009G119300--Sobic008G088821 Sobic009G119300--Sobic001G015200 Sobic009G119300--Sobic010G101000 Sobic009G119300--Sobic006G140500 Sobic003G186800 Sobic003G186800 Sobic009G119300--Sobic003G186800 Sobic009G119300--Sobic004G268400 Sobic009G119300--Sobic001G018000 Sobic009G119300--Sobic003G103300 Sobic009G119300--Sobic004G267700 Sobic004G028300--Sobic008G088821 Sobic001G167900 Sobic001G167900 Sobic004G028300--Sobic001G167900 Sobic004G028300--Sobic006G140500 Sobic006G063900 Sobic006G063900 Sobic004G028300--Sobic006G063900 Sobic004G028300--Sobic001G015200 Sobic005G134100 Sobic005G134100 Sobic004G028300--Sobic005G134100 Sobic003G419900 Sobic003G419900 Sobic004G028300--Sobic003G419900 Sobic004G359600 Sobic004G359600 Sobic004G028300--Sobic004G359600 Sobic006G108200 Sobic006G108200 Sobic004G028300--Sobic006G108200 Sobic004G202200--Sobic001G289500 Sobic004G202200--Sobic006G235350 Sobic004G202200--Sobic006G140500 Sobic004G202200--Sobic009G133700 Sobic004G202200--Sobic001G029600 Sobic003G094100 Sobic003G094100 Sobic004G202200--Sobic003G094100 Sobic004G202200--Sobic003G005000 Sobic004G202200--Sobic001G015200 Sobic007G181400 Sobic007G181400 Sobic004G202200--Sobic007G181400 Sobic005G028800--Sobic007G166300 Sobic004G103300 Sobic004G103300 Sobic005G028800--Sobic004G103300 Sobic005G028800--Sobic001G509200 Sobic004G124400 Sobic004G124400 Sobic005G028800--Sobic004G124400 Sobic005G028800--Sobic001G015200 Sobic007G135800 Sobic007G135800 Sobic005G028800--Sobic007G135800 Sobic010G231500 Sobic010G231500 Sobic005G028800--Sobic010G231500 Sobic005G028800--Sobic001G393300 Sobic007G124500 Sobic007G124500 Sobic005G028800--Sobic007G124500 Sobic007G166300--Sobic005G028800 Sobic007G166300--Sobic001G393300 Sobic007G166300--Sobic004G103300 Sobic007G166300--Sobic001G509200 Sobic007G166300--Sobic001G015200 Sobic007G166300--Sobic007G124500 Sobic007G166300--Sobic007G135800 Sobic007G108900 Sobic007G108900 Sobic007G166300--Sobic007G108900 Sobic002G298800 Sobic002G298800 Sobic007G166300--Sobic002G298800
Octagon: transcription factors


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