Gene annotation
Transcriptome id Sobic.004G268400.1
Synonym Sb04g030630
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DNA-binding protein, putative, expressed
UniProt C5Y0C3
Pfam PF13245 PF13087
Panther DB PTHR10887 PTHR10887:SF361
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G35970 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os09g04440.1 : DNA-binding protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT69282 , KQK00926 , KQK00924 , KQK00925 , KQK00923
Barley HORVU0Hr1G016860.8 , HORVU0Hr1G016860.3 , HORVU0Hr1G016860.2 , HORVU0Hr1G016860.1 , HORVU0Hr1G016860.4 , HORVU0Hr1G016860.7 , HORVU0Hr1G016860.6 , HORVU0Hr1G016860.5
Wheat TraesCS6B02G299100 , TraesCS6A02G271700 , TraesCS6D02G251900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.007G016600 expressed protein -
3 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
4 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
5 Sobic.003G304300 expressed protein -
6 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
7 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
8 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
9 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
10 Sobic.001G411100 expressed protein -
11 Sobic.002G030900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
13 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
14 Sobic.009G119300 peptide chain release factor 2, putative, expressed -
15 Sobic.007G124500 methyltransferase, putative, expressed -
16 Sobic.002G356900 threonyl-tRNA synthetase, putative, expressed K01868: TARS, threonyl-tRNA synthetase
17 Sobic.002G132400 -(PubMedID : 26465154)@expressed protein -
18 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
19 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
20 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G268400 Sobic004G268400 Sobic004G267700 Sobic004G267700 Sobic004G268400--Sobic004G267700 Sobic007G016600 Sobic007G016600 Sobic004G268400--Sobic007G016600 Sobic001G018000 Sobic001G018000 Sobic004G268400--Sobic001G018000 Sobic002G351200 Sobic002G351200 Sobic004G268400--Sobic002G351200 Sobic003G304300 Sobic003G304300 Sobic004G268400--Sobic003G304300 Sobic003G186800 Sobic003G186800 Sobic004G268400--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic004G268400--Sobic010G100900 Sobic010G101000 Sobic010G101000 Sobic004G268400--Sobic010G101000 Sobic003G380200 Sobic003G380200 Sobic004G268400--Sobic003G380200 Sobic004G267700--Sobic004G268400 Sobic004G267700--Sobic003G304300 Sobic004G267700--Sobic010G101000 Sobic004G267700--Sobic007G016600 Sobic004G267700--Sobic003G380200 Sobic004G267700--Sobic002G351200 Sobic004G267700--Sobic001G018000 Sobic004G267700--Sobic003G186800 Sobic004G267700--Sobic010G100900 Sobic007G016600--Sobic004G268400 Sobic007G016600--Sobic004G267700 Sobic007G016600--Sobic001G018000 Sobic007G016600--Sobic003G304300 Sobic007G016600--Sobic002G351200 Sobic007G016600--Sobic010G100900 Sobic010G207100 Sobic010G207100 Sobic007G016600--Sobic010G207100 Sobic007G016600--Sobic003G186800 Sobic007G016600--Sobic003G380200 Sobic001G018000--Sobic004G268400 Sobic001G018000--Sobic002G351200 Sobic001G018000--Sobic007G016600 Sobic001G018000--Sobic010G101000 Sobic001G018000--Sobic004G267700 Sobic001G411100 Sobic001G411100 Sobic001G018000--Sobic001G411100 Sobic002G030900 Sobic002G030900 Sobic001G018000--Sobic002G030900 Sobic001G018000--Sobic003G304300 Sobic001G018000--Sobic003G186800 Sobic002G351200--Sobic010G100900 Sobic002G351200--Sobic001G018000 Sobic002G351200--Sobic003G304300 Sobic002G351200--Sobic004G268400 Sobic002G351200--Sobic004G267700 Sobic002G351200--Sobic010G101000 Sobic002G132400 Sobic002G132400 Sobic002G351200--Sobic002G132400 Sobic002G351200--Sobic003G186800 Sobic002G213400 Sobic002G213400 Sobic002G351200--Sobic002G213400 Sobic003G304300--Sobic004G267700 Sobic006G191500 Sobic006G191500 Sobic003G304300--Sobic006G191500 Sobic003G304300--Sobic002G351200 Sobic002G161400 Sobic002G161400 Sobic003G304300--Sobic002G161400 Sobic004G344600 Sobic004G344600 Sobic003G304300--Sobic004G344600 Sobic001G112900 Sobic001G112900 Sobic003G304300--Sobic001G112900 Sobic003G304300--Sobic003G186800 Sobic003G304300--Sobic003G380200 Sobic003G304300--Sobic004G268400 Sobic003G186800--Sobic003G380200 Sobic003G186800--Sobic003G304300 Sobic009G225600 Sobic009G225600 Sobic003G186800--Sobic009G225600 Sobic003G186800--Sobic006G191500 Sobic001G485100 Sobic001G485100 Sobic003G186800--Sobic001G485100 Sobic003G186800--Sobic010G101000 Sobic003G186800--Sobic004G268400 Sobic002G047400 Sobic002G047400 Sobic003G186800--Sobic002G047400 Sobic003G186800--Sobic004G267700 Sobic010G100900--Sobic002G351200 Sobic010G100900--Sobic003G380200 Sobic010G100900--Sobic002G132400 Sobic010G100900--Sobic004G268400 Sobic010G100900--Sobic003G304300 Sobic010G100900--Sobic004G267700 Sobic004G271600 Sobic004G271600 Sobic010G100900--Sobic004G271600 Sobic002G356900 Sobic002G356900 Sobic010G100900--Sobic002G356900 Sobic004G128900 Sobic004G128900 Sobic010G100900--Sobic004G128900 Sobic010G101000--Sobic004G267700 Sobic010G101000--Sobic009G225600 Sobic010G101000--Sobic002G030900 Sobic010G101000--Sobic003G186800 Sobic010G101000--Sobic002G351200 Sobic010G101000--Sobic001G018000 Sobic010G104700 Sobic010G104700 Sobic010G101000--Sobic010G104700 Sobic010G101000--Sobic004G268400 Sobic010G101000--Sobic003G304300 Sobic003G380200--Sobic006G191500 Sobic003G380200--Sobic003G186800 Sobic003G380200--Sobic010G100900 Sobic003G380200--Sobic003G304300 Sobic003G380200--Sobic004G267700 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic003G380200--Sobic002G161400 Sobic003G380200--Sobic004G268400
Octagon: transcription factors


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