Gene annotation
| Transcriptome id | Sobic.001G411100.1,Sobic.001G411100.2,Sobic.001G411100.3 |
|---|---|
| Synonym | Sb01g038790 |
| Functional annotation | expressed protein |
| UniProt | A0A1B6QNY2 , C5WNM5 |
| Pfam | PF13911 |
| Panther DB | PTHR28630 PTHR28630:SF5 |
| NCBI CDD | KOG4498; Uncharacterized conserved protein |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G37240 : Thioredoxin superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g17600.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a001932 |
| Brachypodium | - |
| Barley | HORVU4Hr1G057410.9 , HORVU4Hr1G057410.8 , HORVU4Hr1G057410.1 , HORVU4Hr1G057410.3 , HORVU4Hr1G057410.2 , HORVU4Hr1G057410.5 , HORVU4Hr1G057410.4 , HORVU4Hr1G057410.7 , HORVU4Hr1G057410.14 , HORVU4Hr1G057410.17 , HORVU4Hr1G057410.11 , HORVU4Hr1G057410.10 , HORVU4Hr1G057410.13 , HORVU4Hr1G057410.18 , HORVU4Hr1G057410.12 |
| Wheat | TraesCS4D02G199300 , TraesCS4A02G105500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G124500 | methyltransferase, putative, expressed | - |
| 2 | Sobic.001G018000 | amine oxidase, flavin-containing, domain containing protein, expressed | - |
| 3 | Sobic.002G030900 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 4 | Sobic.001G104700 | expressed protein | - |
| 5 | Sobic.004G268400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed | - |
| 6 | Sobic.010G101000 | peptide methionine sulfoxide reductase msrB, putative, expressed | K07305: peptide-methionine (R)-S-oxide reductase |
| 7 | Sobic.003G103300 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed | K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase |
| 8 | Sobic.002G351200 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 9 | Sobic.004G267700 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 10 | Sobic.010G207100 | methyltransferase domain containing protein, putative, expressed | - |
| 11 | Sobic.002G072500 | expressed protein | - |
| 12 | Sobic.001G104600 | expressed protein | - |
| 13 | Sobic.010G231500 | glutamate receptor, putative, expressed | K05387: glutamate receptor, ionotropic, plant |
| 14 | Sobic.007G016600 | expressed protein | - |
| 15 | Sobic.001G434000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 16 | Sobic.004G125800 | tocopherol cyclase, chloroplast precursor, putative, expressed | K09834: VTE1, tocopherol cyclase |
| 17 | Sobic.001G015200 | Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed | - |
| 18 | Sobic.008G088821 | - | K05356: SPS, all-trans-nonaprenyl-diphosphate synthase |
| 19 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 20 | Sobic.010G100900 | alanyl-tRNA synthetase, putative, expressed | K01872: AARS, alanyl-tRNA synthetase |
Gene co-expression network
Octagon: transcription factors
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