Gene annotation
Transcriptome id Sobic.010G100900.1
Synonym EMB263, EMB86, Sb10g008780, EMB1030
Functional annotation alanyl-tRNA synthetase, putative, expressed
UniProt A0A194YIA8 , C5Z7K4
Pfam PF02272 PF07973 PF01411
Panther DB PTHR11777 PTHR11777:SF14
NCBI CDD -
KEGG Orthology K01872; AARS, alanyl-tRNA synthetase
Gene Ontology GO:0003676; nucleic acid binding GO:0016876aminoacyl-tRNA ligase activity GO:0005524ATP binding GO:0006419alanyl-tRNA aminoacylation GO:0004813alanine-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT5G22800 : Alanyl-tRNA synthetase, class IIc
RAP-DB (Rice) LOC_Os06g13660.1 : alanyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a049388
Brachypodium KQK18755 , KQK18756
Barley HORVU7Hr1G040390.5 , HORVU7Hr1G040390.4 , HORVU7Hr1G040390.7 , HORVU7Hr1G040390.6 , HORVU7Hr1G040390.1 , HORVU7Hr1G040390.3 , HORVU7Hr1G040390.2 , HORVU7Hr1G040390.9 , HORVU7Hr1G040390.8 , HORVU7Hr1G040390.17 , HORVU7Hr1G040390.16 , HORVU7Hr1G040390.11 , HORVU7Hr1G040390.10 , HORVU7Hr1G040390.13 , HORVU7Hr1G040390.12 , HORVU7Hr1G040390.15 , HORVU7Hr1G040390.14 , HORVU7Hr1G040390.18
Wheat TraesCS7B02G103200 , TraesCS7B02G103200 , TraesCS7D02G199300 , TraesCS7D02G199300 , TraesCS7D02G199300 , TraesCS7A02G237000 , TraesCS7A02G237000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
3 Sobic.002G132400 -(PubMedID : 26465154)@expressed protein -
4 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
5 Sobic.003G304300 expressed protein -
6 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
7 Sobic.004G271600 region found in RelA/SpoT proteins containing protein, expressed -
8 Sobic.002G356900 threonyl-tRNA synthetase, putative, expressed K01868: TARS, threonyl-tRNA synthetase
9 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
10 Sobic.007G124500 methyltransferase, putative, expressed -
11 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
12 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
13 Sobic.007G016600 expressed protein -
14 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
15 Sobic.002G072500 expressed protein -
16 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
17 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
18 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
19 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
20 Sobic.009G004100 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase


Gene co-expression network
sample Sobic010G100900 Sobic010G100900 Sobic002G351200 Sobic002G351200 Sobic010G100900--Sobic002G351200 Sobic003G380200 Sobic003G380200 Sobic010G100900--Sobic003G380200 Sobic002G132400 Sobic002G132400 Sobic010G100900--Sobic002G132400 Sobic004G268400 Sobic004G268400 Sobic010G100900--Sobic004G268400 Sobic003G304300 Sobic003G304300 Sobic010G100900--Sobic003G304300 Sobic004G267700 Sobic004G267700 Sobic010G100900--Sobic004G267700 Sobic004G271600 Sobic004G271600 Sobic010G100900--Sobic004G271600 Sobic002G356900 Sobic002G356900 Sobic010G100900--Sobic002G356900 Sobic004G128900 Sobic004G128900 Sobic010G100900--Sobic004G128900 Sobic002G351200--Sobic010G100900 Sobic001G018000 Sobic001G018000 Sobic002G351200--Sobic001G018000 Sobic002G351200--Sobic003G304300 Sobic002G351200--Sobic004G268400 Sobic002G351200--Sobic004G267700 Sobic010G101000 Sobic010G101000 Sobic002G351200--Sobic010G101000 Sobic002G351200--Sobic002G132400 Sobic003G186800 Sobic003G186800 Sobic002G351200--Sobic003G186800 Sobic002G213400 Sobic002G213400 Sobic002G351200--Sobic002G213400 Sobic006G191500 Sobic006G191500 Sobic003G380200--Sobic006G191500 Sobic003G380200--Sobic003G186800 Sobic003G380200--Sobic010G100900 Sobic003G380200--Sobic003G304300 Sobic003G380200--Sobic004G267700 Sobic001G485100 Sobic001G485100 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic002G161400 Sobic002G161400 Sobic003G380200--Sobic002G161400 Sobic003G380200--Sobic004G268400 Sobic002G132400--Sobic004G271600 Sobic002G132400--Sobic010G100900 Sobic002G132400--Sobic002G351200 Sobic001G509200 Sobic001G509200 Sobic002G132400--Sobic001G509200 Sobic007G135800 Sobic007G135800 Sobic002G132400--Sobic007G135800 Sobic002G132400--Sobic003G380200 Sobic007G124500 Sobic007G124500 Sobic002G132400--Sobic007G124500 Sobic002G132400--Sobic004G268400 Sobic002G408000 Sobic002G408000 Sobic002G132400--Sobic002G408000 Sobic004G268400--Sobic004G267700 Sobic007G016600 Sobic007G016600 Sobic004G268400--Sobic007G016600 Sobic004G268400--Sobic001G018000 Sobic004G268400--Sobic002G351200 Sobic004G268400--Sobic003G304300 Sobic004G268400--Sobic003G186800 Sobic004G268400--Sobic010G100900 Sobic004G268400--Sobic010G101000 Sobic004G268400--Sobic003G380200 Sobic003G304300--Sobic004G267700 Sobic003G304300--Sobic006G191500 Sobic003G304300--Sobic002G351200 Sobic003G304300--Sobic002G161400 Sobic004G344600 Sobic004G344600 Sobic003G304300--Sobic004G344600 Sobic001G112900 Sobic001G112900 Sobic003G304300--Sobic001G112900 Sobic003G304300--Sobic003G186800 Sobic003G304300--Sobic003G380200 Sobic003G304300--Sobic004G268400 Sobic004G267700--Sobic004G268400 Sobic004G267700--Sobic003G304300 Sobic004G267700--Sobic010G101000 Sobic004G267700--Sobic007G016600 Sobic004G267700--Sobic003G380200 Sobic004G267700--Sobic002G351200 Sobic004G267700--Sobic001G018000 Sobic004G267700--Sobic003G186800 Sobic004G267700--Sobic010G100900 Sobic004G271600--Sobic002G132400 Sobic002G081400 Sobic002G081400 Sobic004G271600--Sobic002G081400 Sobic004G271600--Sobic010G100900 Sobic004G271600--Sobic002G351200 Sobic004G271600--Sobic007G124500 Sobic002G072500 Sobic002G072500 Sobic004G271600--Sobic002G072500 Sobic006G090100 Sobic006G090100 Sobic004G271600--Sobic006G090100 Sobic004G271600--Sobic001G509200 Sobic002G060800 Sobic002G060800 Sobic004G271600--Sobic002G060800 Sobic002G356900--Sobic010G100900 Sobic002G356900--Sobic007G087100 Sobic004G300100 Sobic004G300100 Sobic002G356900--Sobic004G300100 Sobic002G356900--Sobic003G380200 Sobic009G170200 Sobic009G170200 Sobic002G356900--Sobic009G170200 Sobic007G010800 Sobic007G010800 Sobic002G356900--Sobic007G010800 Sobic002G356900--Sobic004G268400 Sobic010G231500 Sobic010G231500 Sobic002G356900--Sobic010G231500 Sobic004G317700 Sobic004G317700 Sobic002G356900--Sobic004G317700 Sobic004G128900--Sobic002G161400 Sobic004G153900 Sobic004G153900 Sobic004G128900--Sobic004G153900 Sobic004G128900--Sobic006G191500 Sobic006G235400 Sobic006G235400 Sobic004G128900--Sobic006G235400 Sobic006G161500 Sobic006G161500 Sobic004G128900--Sobic006G161500 Sobic004G128900--Sobic004G344600 Sobic004G128900--Sobic003G380200 Sobic001G331600 Sobic001G331600 Sobic004G128900--Sobic001G331600 Sobic004G128900--Sobic001G485100
Octagon: transcription factors


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