Gene annotation
Transcriptome id Sobic.004G271600.1
Synonym RSH3, ATRSH3, Sb04g030900, AT-RSH3
Functional annotation region found in RelA/SpoT proteins containing protein, expressed
UniProt C5Y0F0
Pfam PF01966 PF04607
Panther DB PTHR21262 PTHR21262:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015969; guanosine tetraphosphate metabolic process


Orthologs (automatic annotation)
TAIR AT1G54130 : RELA/SPOT homolog 3
RAP-DB (Rice) LOC_Os02g47120.1 : region found in RelA/SpoT proteins containing protein, expressed
MaizeGDB (Corn) Zm00025a032409
Brachypodium KQK00883
Barley HORVU6Hr1G067890.8 , HORVU6Hr1G067890.9 , HORVU6Hr1G067890.2 , HORVU6Hr1G067890.3 , HORVU6Hr1G067890.4 , HORVU6Hr1G067890.5 , HORVU6Hr1G067890.6 , HORVU6Hr1G067890.7 , HORVU6Hr1G067890.29 , HORVU6Hr1G067890.28 , HORVU6Hr1G067890.21 , HORVU6Hr1G067890.27 , HORVU6Hr1G067890.26 , HORVU6Hr1G067890.24 , HORVU6Hr1G067890.30 , HORVU6Hr1G067890.31 , HORVU6Hr1G067850.1 , HORVU6Hr1G067890.12 , HORVU6Hr1G067890.13 , HORVU6Hr1G067890.10 , HORVU6Hr1G067890.11 , HORVU6Hr1G067890.16 , HORVU6Hr1G067890.17 , HORVU6Hr1G067890.14 , HORVU6Hr1G067890.15 , HORVU6Hr1G067890.18 , HORVU6Hr1G067890.19 , HORVU6Hr1G067890.23 , HORVU6Hr1G067890.22 , HORVU6Hr1G067890.20 , HORVU6Hr1G067890.25
Wheat TraesCS6D02G246800 , TraesCS6D02G246800 , TraesCS6A02G268100 , TraesCS6A02G268100 , TraesCS6B02G295300 , TraesCS6B02G295300
Populus -


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cDNA sequences
Sobic.004G271600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G132400 -(PubMedID : 26465154)@expressed protein -
2 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
3 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
4 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
5 Sobic.007G124500 methyltransferase, putative, expressed -
6 Sobic.002G072500 expressed protein -
7 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
8 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
9 Sobic.002G060800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf45, putative, expressed -
10 Sobic.004G300100 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
11 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
12 Sobic.009G073900 thioredoxin, putative, expressed -
13 Sobic.005G179300 ABC transporter, ATP-binding protein, putative, expressed -
14 Sobic.001G077300 thioredoxin, putative, expressed -
15 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
16 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
17 Sobic.001G470300 - -
18 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
19 Sobic.009G004100 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
20 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -


Gene co-expression network
sample Sobic004G271600 Sobic004G271600 Sobic002G132400 Sobic002G132400 Sobic004G271600--Sobic002G132400 Sobic002G081400 Sobic002G081400 Sobic004G271600--Sobic002G081400 Sobic010G100900 Sobic010G100900 Sobic004G271600--Sobic010G100900 Sobic002G351200 Sobic002G351200 Sobic004G271600--Sobic002G351200 Sobic007G124500 Sobic007G124500 Sobic004G271600--Sobic007G124500 Sobic002G072500 Sobic002G072500 Sobic004G271600--Sobic002G072500 Sobic006G090100 Sobic006G090100 Sobic004G271600--Sobic006G090100 Sobic001G509200 Sobic001G509200 Sobic004G271600--Sobic001G509200 Sobic002G060800 Sobic002G060800 Sobic004G271600--Sobic002G060800 Sobic002G132400--Sobic004G271600 Sobic002G132400--Sobic010G100900 Sobic002G132400--Sobic002G351200 Sobic002G132400--Sobic001G509200 Sobic007G135800 Sobic007G135800 Sobic002G132400--Sobic007G135800 Sobic003G380200 Sobic003G380200 Sobic002G132400--Sobic003G380200 Sobic002G132400--Sobic007G124500 Sobic004G268400 Sobic004G268400 Sobic002G132400--Sobic004G268400 Sobic002G408000 Sobic002G408000 Sobic002G132400--Sobic002G408000 Sobic004G317700 Sobic004G317700 Sobic002G081400--Sobic004G317700 Sobic002G081400--Sobic004G271600 Sobic009G073900 Sobic009G073900 Sobic002G081400--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic002G081400--Sobic001G077300 Sobic003G003450 Sobic003G003450 Sobic002G081400--Sobic003G003450 Sobic002G081400--Sobic006G090100 Sobic002G081400--Sobic001G509200 Sobic002G081400--Sobic007G124500 Sobic009G170200 Sobic009G170200 Sobic002G081400--Sobic009G170200 Sobic010G100900--Sobic002G351200 Sobic010G100900--Sobic003G380200 Sobic010G100900--Sobic002G132400 Sobic010G100900--Sobic004G268400 Sobic003G304300 Sobic003G304300 Sobic010G100900--Sobic003G304300 Sobic004G267700 Sobic004G267700 Sobic010G100900--Sobic004G267700 Sobic010G100900--Sobic004G271600 Sobic002G356900 Sobic002G356900 Sobic010G100900--Sobic002G356900 Sobic004G128900 Sobic004G128900 Sobic010G100900--Sobic004G128900 Sobic002G351200--Sobic010G100900 Sobic001G018000 Sobic001G018000 Sobic002G351200--Sobic001G018000 Sobic002G351200--Sobic003G304300 Sobic002G351200--Sobic004G268400 Sobic002G351200--Sobic004G267700 Sobic010G101000 Sobic010G101000 Sobic002G351200--Sobic010G101000 Sobic002G351200--Sobic002G132400 Sobic003G186800 Sobic003G186800 Sobic002G351200--Sobic003G186800 Sobic002G213400 Sobic002G213400 Sobic002G351200--Sobic002G213400 Sobic007G124500--Sobic002G072500 Sobic001G411100 Sobic001G411100 Sobic007G124500--Sobic001G411100 Sobic007G166300 Sobic007G166300 Sobic007G124500--Sobic007G166300 Sobic007G124500--Sobic001G509200 Sobic007G124500--Sobic010G100900 Sobic007G124500--Sobic002G351200 Sobic004G103300 Sobic004G103300 Sobic007G124500--Sobic004G103300 Sobic010G231500 Sobic010G231500 Sobic007G124500--Sobic010G231500 Sobic001G393300 Sobic001G393300 Sobic007G124500--Sobic001G393300 Sobic002G072500--Sobic007G124500 Sobic002G072500--Sobic001G393300 Sobic001G368600 Sobic001G368600 Sobic002G072500--Sobic001G368600 Sobic002G072500--Sobic001G509200 Sobic002G072500--Sobic007G166300 Sobic002G072500--Sobic007G135800 Sobic002G072500--Sobic010G100900 Sobic002G072500--Sobic004G103300 Sobic002G072500--Sobic002G351200 Sobic001G207800 Sobic001G207800 Sobic006G090100--Sobic001G207800 Sobic001G283100 Sobic001G283100 Sobic006G090100--Sobic001G283100 Sobic006G090100--Sobic001G077300 Sobic006G090100--Sobic001G509200 Sobic006G090100--Sobic009G073900 Sobic002G382700 Sobic002G382700 Sobic006G090100--Sobic002G382700 Sobic003G341300 Sobic003G341300 Sobic006G090100--Sobic003G341300 Sobic001G046000 Sobic001G046000 Sobic006G090100--Sobic001G046000 Sobic006G090100--Sobic002G081400 Sobic001G509200--Sobic007G135800 Sobic001G509200--Sobic004G103300 Sobic001G509200--Sobic001G393300 Sobic007G108900 Sobic007G108900 Sobic001G509200--Sobic007G108900 Sobic001G509200--Sobic007G166300 Sobic003G094100 Sobic003G094100 Sobic001G509200--Sobic003G094100 Sobic006G213700 Sobic006G213700 Sobic001G509200--Sobic006G213700 Sobic001G509200--Sobic006G090100 Sobic001G509200--Sobic009G073900 Sobic002G060800--Sobic002G351200 Sobic009G225600 Sobic009G225600 Sobic002G060800--Sobic009G225600 Sobic010G223200 Sobic010G223200 Sobic002G060800--Sobic010G223200 Sobic003G103300 Sobic003G103300 Sobic002G060800--Sobic003G103300 Sobic002G060800--Sobic001G046000 Sobic002G060800--Sobic006G090100 Sobic002G060800--Sobic010G101000 Sobic002G060800--Sobic004G317700 Sobic002G060800--Sobic004G271600
Octagon: transcription factors


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