Gene annotation
Transcriptome id Sobic.002G132400.2,Sobic.002G132400.1
Synonym Sb02g011390
Functional annotation - (PubMedID : 26465154)
expressed protein
UniProt A0A1W0W3M1 , C5X5U6
Pfam -
Panther DB PTHR36761 PTHR36761:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26580 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g31490.1 : expressed protein
MaizeGDB (Corn) Zm00025a013507
Brachypodium PNT65191 , KQJ91567
Barley -
Wheat TraesCS5D02G379500
Populus -


JBrowse

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cDNA sequences
Sobic.002G132400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G271600 region found in RelA/SpoT proteins containing protein, expressed -
2 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
3 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
4 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
5 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
6 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
7 Sobic.007G124500 methyltransferase, putative, expressed -
8 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
9 Sobic.002G408000 KIP1, putative, expressed -
10 Sobic.002G072500 expressed protein -
11 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
12 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
14 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
15 Sobic.006G212800 expressed protein -
16 Sobic.009G004100 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
17 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
18 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
19 Sobic.009G073900 thioredoxin, putative, expressed -
20 Sobic.002G060800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf45, putative, expressed -


Gene co-expression network
sample Sobic002G132400 Sobic002G132400 Sobic004G271600 Sobic004G271600 Sobic002G132400--Sobic004G271600 Sobic010G100900 Sobic010G100900 Sobic002G132400--Sobic010G100900 Sobic002G351200 Sobic002G351200 Sobic002G132400--Sobic002G351200 Sobic001G509200 Sobic001G509200 Sobic002G132400--Sobic001G509200 Sobic007G135800 Sobic007G135800 Sobic002G132400--Sobic007G135800 Sobic003G380200 Sobic003G380200 Sobic002G132400--Sobic003G380200 Sobic007G124500 Sobic007G124500 Sobic002G132400--Sobic007G124500 Sobic004G268400 Sobic004G268400 Sobic002G132400--Sobic004G268400 Sobic002G408000 Sobic002G408000 Sobic002G132400--Sobic002G408000 Sobic004G271600--Sobic002G132400 Sobic002G081400 Sobic002G081400 Sobic004G271600--Sobic002G081400 Sobic004G271600--Sobic010G100900 Sobic004G271600--Sobic002G351200 Sobic004G271600--Sobic007G124500 Sobic002G072500 Sobic002G072500 Sobic004G271600--Sobic002G072500 Sobic006G090100 Sobic006G090100 Sobic004G271600--Sobic006G090100 Sobic004G271600--Sobic001G509200 Sobic002G060800 Sobic002G060800 Sobic004G271600--Sobic002G060800 Sobic010G100900--Sobic002G351200 Sobic010G100900--Sobic003G380200 Sobic010G100900--Sobic002G132400 Sobic010G100900--Sobic004G268400 Sobic003G304300 Sobic003G304300 Sobic010G100900--Sobic003G304300 Sobic004G267700 Sobic004G267700 Sobic010G100900--Sobic004G267700 Sobic010G100900--Sobic004G271600 Sobic002G356900 Sobic002G356900 Sobic010G100900--Sobic002G356900 Sobic004G128900 Sobic004G128900 Sobic010G100900--Sobic004G128900 Sobic002G351200--Sobic010G100900 Sobic001G018000 Sobic001G018000 Sobic002G351200--Sobic001G018000 Sobic002G351200--Sobic003G304300 Sobic002G351200--Sobic004G268400 Sobic002G351200--Sobic004G267700 Sobic010G101000 Sobic010G101000 Sobic002G351200--Sobic010G101000 Sobic002G351200--Sobic002G132400 Sobic003G186800 Sobic003G186800 Sobic002G351200--Sobic003G186800 Sobic002G213400 Sobic002G213400 Sobic002G351200--Sobic002G213400 Sobic001G509200--Sobic007G135800 Sobic004G103300 Sobic004G103300 Sobic001G509200--Sobic004G103300 Sobic001G393300 Sobic001G393300 Sobic001G509200--Sobic001G393300 Sobic007G108900 Sobic007G108900 Sobic001G509200--Sobic007G108900 Sobic007G166300 Sobic007G166300 Sobic001G509200--Sobic007G166300 Sobic003G094100 Sobic003G094100 Sobic001G509200--Sobic003G094100 Sobic006G213700 Sobic006G213700 Sobic001G509200--Sobic006G213700 Sobic001G509200--Sobic006G090100 Sobic009G073900 Sobic009G073900 Sobic001G509200--Sobic009G073900 Sobic007G135800--Sobic001G509200 Sobic007G135800--Sobic003G094100 Sobic007G135800--Sobic001G393300 Sobic001G180200 Sobic001G180200 Sobic007G135800--Sobic001G180200 Sobic007G135800--Sobic004G103300 Sobic007G135800--Sobic006G213700 Sobic007G135800--Sobic007G166300 Sobic003G409700 Sobic003G409700 Sobic007G135800--Sobic003G409700 Sobic003G341300 Sobic003G341300 Sobic007G135800--Sobic003G341300 Sobic006G191500 Sobic006G191500 Sobic003G380200--Sobic006G191500 Sobic003G380200--Sobic003G186800 Sobic003G380200--Sobic010G100900 Sobic003G380200--Sobic003G304300 Sobic003G380200--Sobic004G267700 Sobic001G485100 Sobic001G485100 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic002G161400 Sobic002G161400 Sobic003G380200--Sobic002G161400 Sobic003G380200--Sobic004G268400 Sobic007G124500--Sobic002G072500 Sobic001G411100 Sobic001G411100 Sobic007G124500--Sobic001G411100 Sobic007G124500--Sobic007G166300 Sobic007G124500--Sobic001G509200 Sobic007G124500--Sobic010G100900 Sobic007G124500--Sobic002G351200 Sobic007G124500--Sobic004G103300 Sobic010G231500 Sobic010G231500 Sobic007G124500--Sobic010G231500 Sobic007G124500--Sobic001G393300 Sobic004G268400--Sobic004G267700 Sobic007G016600 Sobic007G016600 Sobic004G268400--Sobic007G016600 Sobic004G268400--Sobic001G018000 Sobic004G268400--Sobic002G351200 Sobic004G268400--Sobic003G304300 Sobic004G268400--Sobic003G186800 Sobic004G268400--Sobic010G100900 Sobic004G268400--Sobic010G101000 Sobic004G268400--Sobic003G380200 Sobic002G408000--Sobic002G132400 Sobic002G408000--Sobic002G351200 Sobic002G408000--Sobic010G100900 Sobic002G408000--Sobic004G267700 Sobic002G408000--Sobic006G191500 Sobic009G246400 Sobic009G246400 Sobic002G408000--Sobic009G246400 Sobic002G408000--Sobic003G380200 Sobic002G408000--Sobic003G304300 Sobic002G408000--Sobic004G268400
Octagon: transcription factors


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