Gene annotation
Transcriptome id Sobic.002G060800.1
Synonym Sb02g005070
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
uncharacterized protein ycf45, putative, expressed
UniProt A0A1W0W2K0
Pfam PF00004
Panther DB PTHR20953 PTHR20953:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT3G10420 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os07g08970.1 : uncharacterized protein ycf45, putative, expressed
MaizeGDB (Corn) Zm00025a016049
Brachypodium PNT76872 , KQK20514
Barley HORVU1Hr1G013900.10 , HORVU1Hr1G013900.6 , HORVU1Hr1G013900.7 , HORVU1Hr1G013900.5 , HORVU1Hr1G013900.2 , HORVU1Hr1G013900.3 , HORVU1Hr1G013900.1 , HORVU1Hr1G013900.8 , HORVU1Hr1G013900.9
Wheat TraesCS1A02G066900 , TraesCS1B02G085200 , TraesCS1D02G067900 , TraesCS1D02G067900
Populus -


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cDNA sequences
Sobic.002G060800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
3 Sobic.010G223200 OsFtsH2 FtsH protease, homologue of AtFtsH2/8, expressed K03798: ftsH, cell division protease FtsH
4 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
5 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
7 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
8 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
9 Sobic.004G271600 region found in RelA/SpoT proteins containing protein, expressed -
10 Sobic.002G132400 -(PubMedID : 26465154)@expressed protein -
11 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
12 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
13 Sobic.001G470300 - -
14 Sobic.007G046950 - -
15 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
16 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
17 Sobic.009G073900 thioredoxin, putative, expressed -
18 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
19 Sobic.007G124500 methyltransferase, putative, expressed -
20 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase


Gene co-expression network
sample Sobic002G060800 Sobic002G060800 Sobic002G351200 Sobic002G351200 Sobic002G060800--Sobic002G351200 Sobic009G225600 Sobic009G225600 Sobic002G060800--Sobic009G225600 Sobic010G223200 Sobic010G223200 Sobic002G060800--Sobic010G223200 Sobic003G103300 Sobic003G103300 Sobic002G060800--Sobic003G103300 Sobic001G046000 Sobic001G046000 Sobic002G060800--Sobic001G046000 Sobic006G090100 Sobic006G090100 Sobic002G060800--Sobic006G090100 Sobic010G101000 Sobic010G101000 Sobic002G060800--Sobic010G101000 Sobic004G317700 Sobic004G317700 Sobic002G060800--Sobic004G317700 Sobic004G271600 Sobic004G271600 Sobic002G060800--Sobic004G271600 Sobic010G100900 Sobic010G100900 Sobic002G351200--Sobic010G100900 Sobic001G018000 Sobic001G018000 Sobic002G351200--Sobic001G018000 Sobic003G304300 Sobic003G304300 Sobic002G351200--Sobic003G304300 Sobic004G268400 Sobic004G268400 Sobic002G351200--Sobic004G268400 Sobic004G267700 Sobic004G267700 Sobic002G351200--Sobic004G267700 Sobic002G351200--Sobic010G101000 Sobic002G132400 Sobic002G132400 Sobic002G351200--Sobic002G132400 Sobic003G186800 Sobic003G186800 Sobic002G351200--Sobic003G186800 Sobic002G213400 Sobic002G213400 Sobic002G351200--Sobic002G213400 Sobic009G225600--Sobic001G046000 Sobic009G225600--Sobic010G101000 Sobic009G225600--Sobic003G186800 Sobic002G047400 Sobic002G047400 Sobic009G225600--Sobic002G047400 Sobic001G485100 Sobic001G485100 Sobic009G225600--Sobic001G485100 Sobic010G104700 Sobic010G104700 Sobic009G225600--Sobic010G104700 Sobic009G225600--Sobic002G351200 Sobic001G015200 Sobic001G015200 Sobic009G225600--Sobic001G015200 Sobic003G380200 Sobic003G380200 Sobic009G225600--Sobic003G380200 Sobic010G223200--Sobic002G060800 Sobic002G291800 Sobic002G291800 Sobic010G223200--Sobic002G291800 Sobic007G006200 Sobic007G006200 Sobic010G223200--Sobic007G006200 Sobic010G223200--Sobic002G351200 Sobic010G223200--Sobic004G271600 Sobic010G223200--Sobic004G317700 Sobic002G275100 Sobic002G275100 Sobic010G223200--Sobic002G275100 Sobic010G207100 Sobic010G207100 Sobic010G223200--Sobic010G207100 Sobic010G223200--Sobic002G132400 Sobic003G103300--Sobic001G015200 Sobic008G088821 Sobic008G088821 Sobic003G103300--Sobic008G088821 Sobic003G103300--Sobic004G268400 Sobic003G103300--Sobic010G101000 Sobic003G103300--Sobic001G018000 Sobic001G411100 Sobic001G411100 Sobic003G103300--Sobic001G411100 Sobic001G104700 Sobic001G104700 Sobic003G103300--Sobic001G104700 Sobic003G103300--Sobic002G060800 Sobic003G103300--Sobic002G351200 Sobic001G046000--Sobic009G225600 Sobic001G046000--Sobic001G485100 Sobic001G046000--Sobic010G104700 Sobic001G046000--Sobic002G047400 Sobic001G046000--Sobic003G186800 Sobic001G046000--Sobic010G101000 Sobic001G046000--Sobic006G090100 Sobic004G153900 Sobic004G153900 Sobic001G046000--Sobic004G153900 Sobic006G191500 Sobic006G191500 Sobic001G046000--Sobic006G191500 Sobic001G207800 Sobic001G207800 Sobic006G090100--Sobic001G207800 Sobic001G283100 Sobic001G283100 Sobic006G090100--Sobic001G283100 Sobic001G077300 Sobic001G077300 Sobic006G090100--Sobic001G077300 Sobic001G509200 Sobic001G509200 Sobic006G090100--Sobic001G509200 Sobic009G073900 Sobic009G073900 Sobic006G090100--Sobic009G073900 Sobic002G382700 Sobic002G382700 Sobic006G090100--Sobic002G382700 Sobic003G341300 Sobic003G341300 Sobic006G090100--Sobic003G341300 Sobic006G090100--Sobic001G046000 Sobic002G081400 Sobic002G081400 Sobic006G090100--Sobic002G081400 Sobic010G101000--Sobic004G267700 Sobic010G101000--Sobic009G225600 Sobic002G030900 Sobic002G030900 Sobic010G101000--Sobic002G030900 Sobic010G101000--Sobic003G186800 Sobic010G101000--Sobic002G351200 Sobic010G101000--Sobic001G018000 Sobic010G101000--Sobic010G104700 Sobic010G101000--Sobic004G268400 Sobic010G101000--Sobic003G304300 Sobic004G317700--Sobic002G081400 Sobic002G356900 Sobic002G356900 Sobic004G317700--Sobic002G356900 Sobic004G300100 Sobic004G300100 Sobic004G317700--Sobic004G300100 Sobic007G087100 Sobic007G087100 Sobic004G317700--Sobic007G087100 Sobic004G317700--Sobic009G073900 Sobic003G003450 Sobic003G003450 Sobic004G317700--Sobic003G003450 Sobic004G317700--Sobic002G060800 Sobic002G072400 Sobic002G072400 Sobic004G317700--Sobic002G072400 Sobic007G124500 Sobic007G124500 Sobic004G317700--Sobic007G124500 Sobic004G271600--Sobic002G132400 Sobic004G271600--Sobic002G081400 Sobic004G271600--Sobic010G100900 Sobic004G271600--Sobic002G351200 Sobic004G271600--Sobic007G124500 Sobic002G072500 Sobic002G072500 Sobic004G271600--Sobic002G072500 Sobic004G271600--Sobic006G090100 Sobic004G271600--Sobic001G509200 Sobic004G271600--Sobic002G060800
Octagon: transcription factors


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