Gene annotation
Transcriptome id Sobic.003G103300.2,Sobic.003G103300.1
Synonym DXR, PDE129, Sb03g008650
Functional annotation 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
UniProt A0A1B6Q2G6 , A0A1B6Q2I8
Pfam PF13288 PF08436 PF02670
Panther DB PTHR30525 PTHR30525:SF2
NCBI CDD -
KEGG Orthology K00099; 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Gene Ontology GO:0005515; protein binding GO:0008299isoprenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G62790 : 1-deoxy-D-xylulose 5-phosphate reductoisomerase
RAP-DB (Rice) LOC_Os01g01710.1 : 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a023812 , Zm00025a018391 , Zm00025a035422
Brachypodium KQK02296
Barley HORVU3Hr1G000390.11 , HORVU3Hr1G000390.10 , HORVU3Hr1G000390.12 , HORVU3Hr1G000390.9 , HORVU3Hr1G000390.8 , HORVU3Hr1G000390.5 , HORVU3Hr1G000390.4 , HORVU3Hr1G000390.7 , HORVU3Hr1G000390.6 , HORVU3Hr1G000390.1 , HORVU3Hr1G000390.3 , HORVU3Hr1G000390.2
Wheat TraesCS3B02G000700 , TraesCS4A02G442600 , TraesCS7A02G056000 , TraesCS3A02G001700 , TraesCSU02G056300 , TraesCS7D02G050900
Populus PNT10083 , PNT10082 , PNT10081 , PNT10080 , PNT10084


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
2 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
3 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
4 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
5 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
6 Sobic.001G411100 expressed protein -
7 Sobic.001G104700 expressed protein -
8 Sobic.002G060800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf45, putative, expressed -
9 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
10 Sobic.009G119300 peptide chain release factor 2, putative, expressed -
11 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
12 Sobic.002G030900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
13 Sobic.007G124500 methyltransferase, putative, expressed -
14 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
15 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
16 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
17 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
18 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
19 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
20 Sobic.003G186800 transporter, major facilitator family, putative, expressed -


Gene co-expression network
sample Sobic003G103300 Sobic003G103300 Sobic001G015200 Sobic001G015200 Sobic003G103300--Sobic001G015200 Sobic008G088821 Sobic008G088821 Sobic003G103300--Sobic008G088821 Sobic004G268400 Sobic004G268400 Sobic003G103300--Sobic004G268400 Sobic010G101000 Sobic010G101000 Sobic003G103300--Sobic010G101000 Sobic001G018000 Sobic001G018000 Sobic003G103300--Sobic001G018000 Sobic001G411100 Sobic001G411100 Sobic003G103300--Sobic001G411100 Sobic001G104700 Sobic001G104700 Sobic003G103300--Sobic001G104700 Sobic002G060800 Sobic002G060800 Sobic003G103300--Sobic002G060800 Sobic002G351200 Sobic002G351200 Sobic003G103300--Sobic002G351200 Sobic001G015200--Sobic008G088821 Sobic007G166300 Sobic007G166300 Sobic001G015200--Sobic007G166300 Sobic001G015200--Sobic003G103300 Sobic006G140500 Sobic006G140500 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G509200 Sobic001G509200 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic009G119300 Sobic009G119300 Sobic001G015200--Sobic009G119300 Sobic001G015200--Sobic010G101000 Sobic008G088821--Sobic001G015200 Sobic008G088821--Sobic006G140500 Sobic004G028300 Sobic004G028300 Sobic008G088821--Sobic004G028300 Sobic008G088821--Sobic009G119300 Sobic008G088821--Sobic003G103300 Sobic008G088821--Sobic001G018000 Sobic008G088821--Sobic004G268400 Sobic008G088821--Sobic010G101000 Sobic002G030900 Sobic002G030900 Sobic008G088821--Sobic002G030900 Sobic004G267700 Sobic004G267700 Sobic004G268400--Sobic004G267700 Sobic007G016600 Sobic007G016600 Sobic004G268400--Sobic007G016600 Sobic004G268400--Sobic001G018000 Sobic004G268400--Sobic002G351200 Sobic003G304300 Sobic003G304300 Sobic004G268400--Sobic003G304300 Sobic003G186800 Sobic003G186800 Sobic004G268400--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic004G268400--Sobic010G100900 Sobic004G268400--Sobic010G101000 Sobic003G380200 Sobic003G380200 Sobic004G268400--Sobic003G380200 Sobic010G101000--Sobic004G267700 Sobic009G225600 Sobic009G225600 Sobic010G101000--Sobic009G225600 Sobic010G101000--Sobic002G030900 Sobic010G101000--Sobic003G186800 Sobic010G101000--Sobic002G351200 Sobic010G101000--Sobic001G018000 Sobic010G104700 Sobic010G104700 Sobic010G101000--Sobic010G104700 Sobic010G101000--Sobic004G268400 Sobic010G101000--Sobic003G304300 Sobic001G018000--Sobic004G268400 Sobic001G018000--Sobic002G351200 Sobic001G018000--Sobic007G016600 Sobic001G018000--Sobic010G101000 Sobic001G018000--Sobic004G267700 Sobic001G018000--Sobic001G411100 Sobic001G018000--Sobic002G030900 Sobic001G018000--Sobic003G304300 Sobic001G018000--Sobic003G186800 Sobic007G124500 Sobic007G124500 Sobic001G411100--Sobic007G124500 Sobic001G411100--Sobic001G018000 Sobic001G411100--Sobic002G030900 Sobic001G411100--Sobic001G104700 Sobic001G411100--Sobic004G268400 Sobic001G411100--Sobic010G101000 Sobic001G411100--Sobic003G103300 Sobic001G411100--Sobic002G351200 Sobic001G411100--Sobic004G267700 Sobic001G104700--Sobic001G411100 Sobic001G104700--Sobic002G030900 Sobic001G104600 Sobic001G104600 Sobic001G104700--Sobic001G104600 Sobic001G104700--Sobic003G103300 Sobic001G104700--Sobic001G018000 Sobic001G104700--Sobic010G101000 Sobic004G125800 Sobic004G125800 Sobic001G104700--Sobic004G125800 Sobic001G104700--Sobic004G268400 Sobic001G104700--Sobic004G267700 Sobic002G060800--Sobic002G351200 Sobic002G060800--Sobic009G225600 Sobic010G223200 Sobic010G223200 Sobic002G060800--Sobic010G223200 Sobic002G060800--Sobic003G103300 Sobic001G046000 Sobic001G046000 Sobic002G060800--Sobic001G046000 Sobic006G090100 Sobic006G090100 Sobic002G060800--Sobic006G090100 Sobic002G060800--Sobic010G101000 Sobic004G317700 Sobic004G317700 Sobic002G060800--Sobic004G317700 Sobic004G271600 Sobic004G271600 Sobic002G060800--Sobic004G271600 Sobic002G351200--Sobic010G100900 Sobic002G351200--Sobic001G018000 Sobic002G351200--Sobic003G304300 Sobic002G351200--Sobic004G268400 Sobic002G351200--Sobic004G267700 Sobic002G351200--Sobic010G101000 Sobic002G132400 Sobic002G132400 Sobic002G351200--Sobic002G132400 Sobic002G351200--Sobic003G186800 Sobic002G213400 Sobic002G213400 Sobic002G351200--Sobic002G213400
Octagon: transcription factors


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