Gene annotation
Transcriptome id Sobic.001G393300.1
Synonym
Functional annotation HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
UniProt A0A1B6QNN0
Pfam PF13905 PF13419 PF01436
Panther DB PTHR13833 PTHR13833:SF49
NCBI CDD KOG2914; Predicted haloacid-halidohydrolase and related hydrolases
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G56500 : haloacid dehalogenase-like hydrolase family protein
RAP-DB (Rice) LOC_Os03g19760.1 : HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
MaizeGDB (Corn) Zm00025a002181
Brachypodium KQK21967 , KQK21966 , KQK21969 , PNT77529 , PNT77528 , KQK21968 , KQK21970 , KQK21971
Barley HORVU4Hr1G052990.9 , HORVU4Hr1G052990.8 , HORVU4Hr1G052990.3 , HORVU4Hr1G052990.2 , HORVU4Hr1G052990.1 , HORVU4Hr1G052990.7 , HORVU4Hr1G052990.6 , HORVU4Hr1G052990.5 , HORVU4Hr1G052990.4 , HORVU4Hr1G052990.44 , HORVU4Hr1G052990.45 , HORVU4Hr1G052990.46 , HORVU4Hr1G052990.47 , HORVU4Hr1G052990.40 , HORVU4Hr1G052990.41 , HORVU4Hr1G052990.42 , HORVU4Hr1G052990.43 , HORVU4Hr1G052990.48 , HORVU4Hr1G052990.39 , HORVU4Hr1G052990.38 , HORVU4Hr1G052990.35 , HORVU4Hr1G052990.34 , HORVU4Hr1G052990.37 , HORVU4Hr1G052990.36 , HORVU4Hr1G052990.31 , HORVU4Hr1G052990.30 , HORVU4Hr1G052990.33 , HORVU4Hr1G052990.32 , HORVU4Hr1G052990.20 , HORVU4Hr1G052990.22 , HORVU4Hr1G052990.21 , HORVU4Hr1G052990.26 , HORVU4Hr1G052990.27 , HORVU4Hr1G052990.24 , HORVU4Hr1G052990.25 , HORVU4Hr1G052990.28 , HORVU4Hr1G052990.29 , HORVU4Hr1G052990.19 , HORVU4Hr1G052990.18 , HORVU4Hr1G052990.13 , HORVU4Hr1G052990.12 , HORVU4Hr1G052990.11 , HORVU4Hr1G052990.10 , HORVU4Hr1G052990.17 , HORVU4Hr1G052990.16 , HORVU4Hr1G052990.15 , HORVU4Hr1G052990.14 , HORVU4Hr1G052990.23
Wheat TraesCS4D02G182600 , TraesCS4D02G182600 , TraesCS4D02G182600 , TraesCS4B02G181000 , TraesCS4B02G181000 , TraesCS4B02G181000 , TraesCS4A02G123300 , TraesCS4A02G123300 , TraesCS4A02G123300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
2 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
3 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
4 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
5 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.007G108900 APE1, putative, expressed -
7 Sobic.002G198300 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
9 Sobic.002G072500 expressed protein -
10 Sobic.001G368600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
11 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
12 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
13 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
14 Sobic.009G073900 thioredoxin, putative, expressed -
15 Sobic.007G124500 methyltransferase, putative, expressed -
16 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
17 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
18 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
19 Sobic.001G317800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17


Gene co-expression network
sample Sobic001G393300 Sobic001G393300 Sobic002G298800 Sobic002G298800 Sobic001G393300--Sobic002G298800 Sobic007G166300 Sobic007G166300 Sobic001G393300--Sobic007G166300 Sobic001G509200 Sobic001G509200 Sobic001G393300--Sobic001G509200 Sobic004G103300 Sobic004G103300 Sobic001G393300--Sobic004G103300 Sobic003G094100 Sobic003G094100 Sobic001G393300--Sobic003G094100 Sobic007G108900 Sobic007G108900 Sobic001G393300--Sobic007G108900 Sobic002G198300 Sobic002G198300 Sobic001G393300--Sobic002G198300 Sobic007G135800 Sobic007G135800 Sobic001G393300--Sobic007G135800 Sobic002G072500 Sobic002G072500 Sobic001G393300--Sobic002G072500 Sobic002G298800--Sobic001G393300 Sobic002G298800--Sobic002G198300 Sobic002G298800--Sobic004G103300 Sobic007G103400 Sobic007G103400 Sobic002G298800--Sobic007G103400 Sobic006G097500 Sobic006G097500 Sobic002G298800--Sobic006G097500 Sobic001G368600 Sobic001G368600 Sobic002G298800--Sobic001G368600 Sobic002G298800--Sobic003G094100 Sobic004G353100 Sobic004G353100 Sobic002G298800--Sobic004G353100 Sobic002G275300 Sobic002G275300 Sobic002G298800--Sobic002G275300 Sobic005G028800 Sobic005G028800 Sobic007G166300--Sobic005G028800 Sobic007G166300--Sobic001G393300 Sobic007G166300--Sobic004G103300 Sobic007G166300--Sobic001G509200 Sobic001G015200 Sobic001G015200 Sobic007G166300--Sobic001G015200 Sobic007G124500 Sobic007G124500 Sobic007G166300--Sobic007G124500 Sobic007G166300--Sobic007G135800 Sobic007G166300--Sobic007G108900 Sobic007G166300--Sobic002G298800 Sobic001G509200--Sobic007G135800 Sobic001G509200--Sobic004G103300 Sobic001G509200--Sobic001G393300 Sobic001G509200--Sobic007G108900 Sobic001G509200--Sobic007G166300 Sobic001G509200--Sobic003G094100 Sobic006G213700 Sobic006G213700 Sobic001G509200--Sobic006G213700 Sobic006G090100 Sobic006G090100 Sobic001G509200--Sobic006G090100 Sobic009G073900 Sobic009G073900 Sobic001G509200--Sobic009G073900 Sobic004G103300--Sobic001G509200 Sobic004G103300--Sobic007G166300 Sobic004G103300--Sobic001G393300 Sobic004G103300--Sobic001G368600 Sobic004G103300--Sobic002G298800 Sobic004G103300--Sobic007G108900 Sobic004G103300--Sobic006G097500 Sobic004G103300--Sobic005G028800 Sobic004G103300--Sobic007G135800 Sobic003G094100--Sobic007G108900 Sobic003G094100--Sobic001G509200 Sobic003G094100--Sobic007G135800 Sobic003G094100--Sobic001G393300 Sobic001G283100 Sobic001G283100 Sobic003G094100--Sobic001G283100 Sobic007G157300 Sobic007G157300 Sobic003G094100--Sobic007G157300 Sobic003G094100--Sobic004G103300 Sobic001G180200 Sobic001G180200 Sobic003G094100--Sobic001G180200 Sobic003G094100--Sobic002G298800 Sobic007G108900--Sobic003G094100 Sobic007G108900--Sobic001G509200 Sobic007G108900--Sobic004G103300 Sobic007G108900--Sobic001G393300 Sobic006G102000 Sobic006G102000 Sobic007G108900--Sobic006G102000 Sobic007G108900--Sobic001G283100 Sobic010G181300 Sobic010G181300 Sobic007G108900--Sobic010G181300 Sobic007G108900--Sobic007G166300 Sobic007G108900--Sobic002G298800 Sobic002G198300--Sobic002G298800 Sobic002G198300--Sobic001G393300 Sobic002G198300--Sobic007G103400 Sobic002G198300--Sobic001G368600 Sobic010G125833 Sobic010G125833 Sobic002G198300--Sobic010G125833 Sobic001G504400 Sobic001G504400 Sobic002G198300--Sobic001G504400 Sobic001G378100 Sobic001G378100 Sobic002G198300--Sobic001G378100 Sobic003G306200 Sobic003G306200 Sobic002G198300--Sobic003G306200 Sobic001G536700 Sobic001G536700 Sobic002G198300--Sobic001G536700 Sobic007G135800--Sobic001G509200 Sobic007G135800--Sobic003G094100 Sobic007G135800--Sobic001G393300 Sobic007G135800--Sobic001G180200 Sobic007G135800--Sobic004G103300 Sobic007G135800--Sobic006G213700 Sobic007G135800--Sobic007G166300 Sobic003G409700 Sobic003G409700 Sobic007G135800--Sobic003G409700 Sobic003G341300 Sobic003G341300 Sobic007G135800--Sobic003G341300 Sobic002G072500--Sobic007G124500 Sobic002G072500--Sobic001G393300 Sobic002G072500--Sobic001G368600 Sobic002G072500--Sobic001G509200 Sobic002G072500--Sobic007G166300 Sobic002G072500--Sobic007G135800 Sobic010G100900 Sobic010G100900 Sobic002G072500--Sobic010G100900 Sobic002G072500--Sobic004G103300 Sobic002G351200 Sobic002G351200 Sobic002G072500--Sobic002G351200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.