Gene annotation
Transcriptome id Sobic.001G368600.1
Synonym Sb01g035100
Functional annotation NAD dependent epimerase/dehydratase family protein, putative, expressed
UniProt C5WZQ5
Pfam PF13460
Panther DB PTHR10366 PTHR10366:SF384
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G31530 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os03g23980.1 : NAD dependent epimerase/dehydratase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002516 , Zm00025a024003 , Zm00025a052353 , Zm00025a050925 , Zm00025a049911
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G368600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
2 Sobic.006G097500 zeaxanthin epoxidase, chloroplast precursor, putative, expressed K09838: ZEP, zeaxanthin epoxidase
3 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
4 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
5 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
6 Sobic.002G072500 expressed protein -
7 Sobic.002G198300 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
9 Sobic.006G025500 - -
10 Sobic.009G004100 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
11 Sobic.005G005400 MATE efflux family protein(PubMedID : 26465154)@MATE efflux protein, putative, expressed -
12 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
13 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
14 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
15 Sobic.007G124500 methyltransferase, putative, expressed -
16 Sobic.004G165900 SOUL heme-binding protein, putative, expressed -
17 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
18 Sobic.002G061900 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
19 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase


Gene co-expression network
sample Sobic001G368600 Sobic001G368600 Sobic004G103300 Sobic004G103300 Sobic001G368600--Sobic004G103300 Sobic006G097500 Sobic006G097500 Sobic001G368600--Sobic006G097500 Sobic002G298800 Sobic002G298800 Sobic001G368600--Sobic002G298800 Sobic001G393300 Sobic001G393300 Sobic001G368600--Sobic001G393300 Sobic007G135800 Sobic007G135800 Sobic001G368600--Sobic007G135800 Sobic002G072500 Sobic002G072500 Sobic001G368600--Sobic002G072500 Sobic002G198300 Sobic002G198300 Sobic001G368600--Sobic002G198300 Sobic007G166300 Sobic007G166300 Sobic001G368600--Sobic007G166300 Sobic006G025500 Sobic006G025500 Sobic001G368600--Sobic006G025500 Sobic001G509200 Sobic001G509200 Sobic004G103300--Sobic001G509200 Sobic004G103300--Sobic007G166300 Sobic004G103300--Sobic001G393300 Sobic004G103300--Sobic001G368600 Sobic004G103300--Sobic002G298800 Sobic007G108900 Sobic007G108900 Sobic004G103300--Sobic007G108900 Sobic004G103300--Sobic006G097500 Sobic005G028800 Sobic005G028800 Sobic004G103300--Sobic005G028800 Sobic004G103300--Sobic007G135800 Sobic002G061900 Sobic002G061900 Sobic006G097500--Sobic002G061900 Sobic006G097500--Sobic002G298800 Sobic006G097500--Sobic004G103300 Sobic006G265900 Sobic006G265900 Sobic006G097500--Sobic006G265900 Sobic006G097500--Sobic001G368600 Sobic010G231500 Sobic010G231500 Sobic006G097500--Sobic010G231500 Sobic007G169100 Sobic007G169100 Sobic006G097500--Sobic007G169100 Sobic005G005400 Sobic005G005400 Sobic006G097500--Sobic005G005400 Sobic006G097500--Sobic005G028800 Sobic002G298800--Sobic001G393300 Sobic002G298800--Sobic002G198300 Sobic002G298800--Sobic004G103300 Sobic007G103400 Sobic007G103400 Sobic002G298800--Sobic007G103400 Sobic002G298800--Sobic006G097500 Sobic002G298800--Sobic001G368600 Sobic003G094100 Sobic003G094100 Sobic002G298800--Sobic003G094100 Sobic004G353100 Sobic004G353100 Sobic002G298800--Sobic004G353100 Sobic002G275300 Sobic002G275300 Sobic002G298800--Sobic002G275300 Sobic001G393300--Sobic002G298800 Sobic001G393300--Sobic007G166300 Sobic001G393300--Sobic001G509200 Sobic001G393300--Sobic004G103300 Sobic001G393300--Sobic003G094100 Sobic001G393300--Sobic007G108900 Sobic001G393300--Sobic002G198300 Sobic001G393300--Sobic007G135800 Sobic001G393300--Sobic002G072500 Sobic007G135800--Sobic001G509200 Sobic007G135800--Sobic003G094100 Sobic007G135800--Sobic001G393300 Sobic001G180200 Sobic001G180200 Sobic007G135800--Sobic001G180200 Sobic007G135800--Sobic004G103300 Sobic006G213700 Sobic006G213700 Sobic007G135800--Sobic006G213700 Sobic007G135800--Sobic007G166300 Sobic003G409700 Sobic003G409700 Sobic007G135800--Sobic003G409700 Sobic003G341300 Sobic003G341300 Sobic007G135800--Sobic003G341300 Sobic007G124500 Sobic007G124500 Sobic002G072500--Sobic007G124500 Sobic002G072500--Sobic001G393300 Sobic002G072500--Sobic001G368600 Sobic002G072500--Sobic001G509200 Sobic002G072500--Sobic007G166300 Sobic002G072500--Sobic007G135800 Sobic010G100900 Sobic010G100900 Sobic002G072500--Sobic010G100900 Sobic002G072500--Sobic004G103300 Sobic002G351200 Sobic002G351200 Sobic002G072500--Sobic002G351200 Sobic002G198300--Sobic002G298800 Sobic002G198300--Sobic001G393300 Sobic002G198300--Sobic007G103400 Sobic002G198300--Sobic001G368600 Sobic010G125833 Sobic010G125833 Sobic002G198300--Sobic010G125833 Sobic001G504400 Sobic001G504400 Sobic002G198300--Sobic001G504400 Sobic001G378100 Sobic001G378100 Sobic002G198300--Sobic001G378100 Sobic003G306200 Sobic003G306200 Sobic002G198300--Sobic003G306200 Sobic001G536700 Sobic001G536700 Sobic002G198300--Sobic001G536700 Sobic007G166300--Sobic005G028800 Sobic007G166300--Sobic001G393300 Sobic007G166300--Sobic004G103300 Sobic007G166300--Sobic001G509200 Sobic001G015200 Sobic001G015200 Sobic007G166300--Sobic001G015200 Sobic007G166300--Sobic007G124500 Sobic007G166300--Sobic007G135800 Sobic007G166300--Sobic007G108900 Sobic007G166300--Sobic002G298800 Sobic006G025500--Sobic001G368600 Sobic006G025500--Sobic002G061900 Sobic009G004100 Sobic009G004100 Sobic006G025500--Sobic009G004100 Sobic006G025500--Sobic006G097500 Sobic006G025500--Sobic010G231500 Sobic004G165900 Sobic004G165900 Sobic006G025500--Sobic004G165900 Sobic006G025500--Sobic002G072500 Sobic006G025500--Sobic002G298800 Sobic006G025500--Sobic004G103300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.