Gene annotation
| Transcriptome id | Sobic.004G103300.1 |
|---|---|
| Synonym | Sb04g008450 |
| Functional annotation | Complex I intermediate-associated protein 30 domain containing protein, putative, expressed |
| UniProt | C5XYM5 |
| Pfam | PF01370 PF13460 PF08547 |
| Panther DB | PTHR13194 PTHR13194:SF19 |
| NCBI CDD | KOG1203; Predicted dehydrogenase |
| KEGG Orthology | - |
| Gene Ontology | GO:0003824; catalytic activity |
Orthologs (automatic annotation)
| TAIR | AT4G18810 : NAD(P)-binding Rossmann-fold superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g13970.1 : Complex I intermediate-associated protein 30 domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a034508 |
| Brachypodium | KQJ94173 , KQJ94174 |
| Barley | HORVU2Hr1G022680.2 , HORVU2Hr1G022680.1 , HORVU2Hr1G022680.6 , HORVU2Hr1G022680.7 , HORVU2Hr1G022680.4 , HORVU2Hr1G022680.5 , HORVU2Hr1G022680.8 , HORVU2Hr1G022680.9 , HORVU2Hr1G022680.10 , HORVU2Hr1G022680.11 , HORVU2Hr1G022680.12 , HORVU2Hr1G022680.13 |
| Wheat | TraesCS2A02G129600 , TraesCS2A02G129600 , TraesCS2A02G129600 , TraesCS2A02G129600 , TraesCS2A02G129600 , TraesCS2B02G151800 , TraesCS2B02G151800 , TraesCS2B02G151800 , TraesCS2D02G131900 , TraesCS2D02G131900 |
| Populus | - |
JBrowse
| Sobic.004G103300 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G509200 | "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed | K11159: carotenoid cleavage oxygenase |
| 2 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 3 | Sobic.001G393300 | HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed | - |
| 4 | Sobic.001G368600 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 5 | Sobic.002G298800 | PAP fibrillin family domain containing protein, expressed | - |
| 6 | Sobic.007G108900 | APE1, putative, expressed | - |
| 7 | Sobic.006G097500 | zeaxanthin epoxidase, chloroplast precursor, putative, expressed | K09838: ZEP, zeaxanthin epoxidase |
| 8 | Sobic.005G028800 | astaxanthin synthase KC28, putative, expressed | - |
| 9 | Sobic.007G135800 | ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed | K06891: ATP-dependent Clp protease adaptor protein ClpS |
| 10 | Sobic.003G094100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 11 | Sobic.009G170200 | translation initiation factor IF-2, chloroplast precursor, putative, expressed | K02519: infB, translation initiation factor IF-2 |
| 12 | Sobic.010G231500 | glutamate receptor, putative, expressed | K05387: glutamate receptor, ionotropic, plant |
| 13 | Sobic.007G124500 | methyltransferase, putative, expressed | - |
| 14 | Sobic.002G198300 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 15 | Sobic.001G436400 | immature colon carcinoma transcript 1 protein precursor, putative, expressed | K15033: peptidyl-tRNA hydrolase ICT1 |
| 16 | Sobic.009G132000 | expressed protein | - |
| 17 | Sobic.005G005400 | MATE efflux family protein(PubMedID : 26465154)@MATE efflux protein, putative, expressed | - |
| 18 | Sobic.001G536700 | expressed protein | - |
| 19 | Sobic.002G081400 | ABC1 family domain containing protein, putative, expressed | K08869: ADCK, aarF domain-containing kinase |
| 20 | Sobic.001G207800 | integral membrane protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
