Gene annotation
Transcriptome id Sobic.001G436400.4
Synonym
Functional annotation immature colon carcinoma transcript 1 protein precursor, putative, expressed
UniProt C6JSA3
Pfam PF00472
Panther DB PTHR11075
NCBI CDD KOG3429; Predicted peptidyl-tRNA hydrolase
KEGG Orthology K15033; peptidyl-tRNA hydrolase ICT1
Gene Ontology GO:0006415; translational termination GO:0003747translation release factor activity


Orthologs (automatic annotation)
TAIR AT1G62850 : Class I peptide chain release factor
RAP-DB (Rice) LOC_Os03g14510.2 : immature colon carcinoma transcript 1 protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a001572
Brachypodium KQK22564 , KQK22565 , KQK22563
Barley -
Wheat TraesCS4D02G224200
Populus -


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cDNA sequences
Sobic.001G436400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
2 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
3 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
4 Sobic.007G108900 APE1, putative, expressed -
5 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
6 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
7 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
8 Sobic.004G124400 uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed -
9 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
10 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
11 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
12 Sobic.006G197300 expressed protein -
13 Sobic.006G097500 zeaxanthin epoxidase, chloroplast precursor, putative, expressed K09838: ZEP, zeaxanthin epoxidase
14 Sobic.003G003450 - K01177: beta-amylase
15 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
16 Sobic.007G181400 TraB family protein, putative, expressed -
17 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
18 Sobic.006G265900 thioredoxin, putative, expressed K03671: thioredoxin 1
19 Sobic.009G073900 thioredoxin, putative, expressed -
20 Sobic.007G103400 expressed protein -


Gene co-expression network
sample Sobic001G436400 Sobic001G436400 Sobic004G103300 Sobic004G103300 Sobic001G436400--Sobic004G103300 Sobic005G028800 Sobic005G028800 Sobic001G436400--Sobic005G028800 Sobic007G166300 Sobic007G166300 Sobic001G436400--Sobic007G166300 Sobic007G108900 Sobic007G108900 Sobic001G436400--Sobic007G108900 Sobic001G509200 Sobic001G509200 Sobic001G436400--Sobic001G509200 Sobic001G015200 Sobic001G015200 Sobic001G436400--Sobic001G015200 Sobic001G393300 Sobic001G393300 Sobic001G436400--Sobic001G393300 Sobic004G124400 Sobic004G124400 Sobic001G436400--Sobic004G124400 Sobic002G298800 Sobic002G298800 Sobic001G436400--Sobic002G298800 Sobic004G103300--Sobic001G509200 Sobic004G103300--Sobic007G166300 Sobic004G103300--Sobic001G393300 Sobic001G368600 Sobic001G368600 Sobic004G103300--Sobic001G368600 Sobic004G103300--Sobic002G298800 Sobic004G103300--Sobic007G108900 Sobic006G097500 Sobic006G097500 Sobic004G103300--Sobic006G097500 Sobic004G103300--Sobic005G028800 Sobic007G135800 Sobic007G135800 Sobic004G103300--Sobic007G135800 Sobic005G028800--Sobic007G166300 Sobic005G028800--Sobic004G103300 Sobic005G028800--Sobic001G509200 Sobic005G028800--Sobic004G124400 Sobic005G028800--Sobic001G015200 Sobic005G028800--Sobic007G135800 Sobic010G231500 Sobic010G231500 Sobic005G028800--Sobic010G231500 Sobic005G028800--Sobic001G393300 Sobic007G124500 Sobic007G124500 Sobic005G028800--Sobic007G124500 Sobic007G166300--Sobic005G028800 Sobic007G166300--Sobic001G393300 Sobic007G166300--Sobic004G103300 Sobic007G166300--Sobic001G509200 Sobic007G166300--Sobic001G015200 Sobic007G166300--Sobic007G124500 Sobic007G166300--Sobic007G135800 Sobic007G166300--Sobic007G108900 Sobic007G166300--Sobic002G298800 Sobic003G094100 Sobic003G094100 Sobic007G108900--Sobic003G094100 Sobic007G108900--Sobic001G509200 Sobic007G108900--Sobic004G103300 Sobic007G108900--Sobic001G393300 Sobic006G102000 Sobic006G102000 Sobic007G108900--Sobic006G102000 Sobic001G283100 Sobic001G283100 Sobic007G108900--Sobic001G283100 Sobic010G181300 Sobic010G181300 Sobic007G108900--Sobic010G181300 Sobic007G108900--Sobic007G166300 Sobic007G108900--Sobic002G298800 Sobic001G509200--Sobic007G135800 Sobic001G509200--Sobic004G103300 Sobic001G509200--Sobic001G393300 Sobic001G509200--Sobic007G108900 Sobic001G509200--Sobic007G166300 Sobic001G509200--Sobic003G094100 Sobic006G213700 Sobic006G213700 Sobic001G509200--Sobic006G213700 Sobic006G090100 Sobic006G090100 Sobic001G509200--Sobic006G090100 Sobic009G073900 Sobic009G073900 Sobic001G509200--Sobic009G073900 Sobic008G088821 Sobic008G088821 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic003G103300 Sobic003G103300 Sobic001G015200--Sobic003G103300 Sobic006G140500 Sobic006G140500 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G015200--Sobic001G509200 Sobic001G015200--Sobic001G393300 Sobic009G119300 Sobic009G119300 Sobic001G015200--Sobic009G119300 Sobic010G101000 Sobic010G101000 Sobic001G015200--Sobic010G101000 Sobic001G393300--Sobic002G298800 Sobic001G393300--Sobic007G166300 Sobic001G393300--Sobic001G509200 Sobic001G393300--Sobic004G103300 Sobic001G393300--Sobic003G094100 Sobic001G393300--Sobic007G108900 Sobic002G198300 Sobic002G198300 Sobic001G393300--Sobic002G198300 Sobic001G393300--Sobic007G135800 Sobic002G072500 Sobic002G072500 Sobic001G393300--Sobic002G072500 Sobic004G124400--Sobic005G028800 Sobic006G063900 Sobic006G063900 Sobic004G124400--Sobic006G063900 Sobic004G124400--Sobic007G166300 Sobic001G167900 Sobic001G167900 Sobic004G124400--Sobic001G167900 Sobic004G124400--Sobic010G231500 Sobic002G061900 Sobic002G061900 Sobic004G124400--Sobic002G061900 Sobic004G124400--Sobic006G097500 Sobic004G124400--Sobic001G436400 Sobic004G359600 Sobic004G359600 Sobic004G124400--Sobic004G359600 Sobic002G298800--Sobic001G393300 Sobic002G298800--Sobic002G198300 Sobic002G298800--Sobic004G103300 Sobic007G103400 Sobic007G103400 Sobic002G298800--Sobic007G103400 Sobic002G298800--Sobic006G097500 Sobic002G298800--Sobic001G368600 Sobic002G298800--Sobic003G094100 Sobic004G353100 Sobic004G353100 Sobic002G298800--Sobic004G353100 Sobic002G275300 Sobic002G275300 Sobic002G298800--Sobic002G275300
Octagon: transcription factors


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