Gene annotation
| Transcriptome id | Sobic.004G124400.2,Sobic.004G124400.1,Sobic.004G124400.3 |
|---|---|
| Synonym | Sb04g010390 |
| Functional annotation | uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed |
| UniProt | A0A1Z5RN37 , C5Y011 , A0A1Z5RM97 |
| Pfam | PF11317 |
| Panther DB | PTHR35550 PTHR35550:SF2 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os05g33290.1 : uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed |
| MaizeGDB (Corn) | Zm00025a034372 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.004G124400 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G028800 | astaxanthin synthase KC28, putative, expressed | - |
| 2 | Sobic.006G063900 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 3 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 4 | Sobic.001G167900 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 5 | Sobic.010G231500 | glutamate receptor, putative, expressed | K05387: glutamate receptor, ionotropic, plant |
| 6 | Sobic.002G061900 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 7 | Sobic.006G097500 | zeaxanthin epoxidase, chloroplast precursor, putative, expressed | K09838: ZEP, zeaxanthin epoxidase |
| 8 | Sobic.001G436400 | immature colon carcinoma transcript 1 protein precursor, putative, expressed | K15033: peptidyl-tRNA hydrolase ICT1 |
| 9 | Sobic.004G359600 | cell division inhibitor, putative, expressed | K07071: uncharacterized protein |
| 10 | Sobic.001G220000 | PPR repeat containing protein, expressed | - |
| 11 | Sobic.004G103300 | Complex I intermediate-associated protein 30 domain containing protein, putative, expressed | - |
| 12 | Sobic.006G265900 | thioredoxin, putative, expressed | K03671: thioredoxin 1 |
| 13 | Sobic.001G015200 | Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed | - |
| 14 | Sobic.007G124500 | methyltransferase, putative, expressed | - |
| 15 | Sobic.002G351600 | prenyltransferase, putative, expressed | K12501: homogentisate solanesyltransferase |
| 16 | Sobic.004G028300 | expressed protein | - |
| 17 | Sobic.009G004100 | -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed | K15918: D-glycerate 3-kinase |
| 18 | Sobic.006G235350 | - | - |
| 19 | Sobic.008G088821 | - | K05356: SPS, all-trans-nonaprenyl-diphosphate synthase |
| 20 | Sobic.004G154800 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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