Gene annotation
Transcriptome id Sobic.002G351600.1
Synonym PDS2, Sb02g037370, HST, ATHST
Functional annotation prenyltransferase, putative, expressed
UniProt A0A1W0W700
Pfam PF01040
Panther DB PTHR11048 PTHR11048:SF24
NCBI CDD -
KEGG Orthology K12501; homogentisate solanesyltransferase
Gene Ontology GO:0016021; integral component of membrane GO:0004659prenyltransferase activity


Orthologs (automatic annotation)
TAIR AT3G11945 : homogentisate prenyltransferase
RAP-DB (Rice) LOC_Os07g38850.1 : prenyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a014977
Brachypodium KQK05130 , KQK05131
Barley -
Wheat TraesCS1D02G367600 , TraesCS1B02G379800 , TraesCS1A02G362700 , TraesCS1A02G362700
Populus -


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cDNA sequences
Sobic.002G351600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G050400 5-formyltetrahydrofolate cyclo-ligase, putative, expressed -
2 Sobic.002G272100 expressed protein -
3 Sobic.001G167900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
4 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
5 Sobic.008G172700 OsDegp15 - Putative Deg protease homologue, expressed -
6 Sobic.006G108200 expressed protein -
7 Sobic.004G055000 peptidase, cysteine peptidase active site, putative, expressed -
8 Sobic.004G124400 uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed -
9 Sobic.003G275200 methyltransferase domain containing protein, expressed -
10 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
11 Sobic.002G267900 expressed protein -
12 Sobic.001G350000 expressed protein -
13 Sobic.002G233700 -(PubMedID : 26976818)@dicarboxylate transporter 2(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
14 Sobic.004G028300 expressed protein -
15 Sobic.002G405100 elongation factor TS family protein, expressed K02357: tsf, elongation factor Ts
16 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
17 Sobic.004G359600 cell division inhibitor, putative, expressed K07071: uncharacterized protein
18 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
19 Sobic.007G130400 FAD dependent oxidoreductase, putative, expressed -
20 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B


Gene co-expression network
sample Sobic002G351600 Sobic002G351600 Sobic008G050400 Sobic008G050400 Sobic002G351600--Sobic008G050400 Sobic002G272100 Sobic002G272100 Sobic002G351600--Sobic002G272100 Sobic001G167900 Sobic001G167900 Sobic002G351600--Sobic001G167900 Sobic002G401800 Sobic002G401800 Sobic002G351600--Sobic002G401800 Sobic008G172700 Sobic008G172700 Sobic002G351600--Sobic008G172700 Sobic006G108200 Sobic006G108200 Sobic002G351600--Sobic006G108200 Sobic004G055000 Sobic004G055000 Sobic002G351600--Sobic004G055000 Sobic004G124400 Sobic004G124400 Sobic002G351600--Sobic004G124400 Sobic003G275200 Sobic003G275200 Sobic002G351600--Sobic003G275200 Sobic008G050400--Sobic002G272100 Sobic008G050400--Sobic002G351600 Sobic005G143500 Sobic005G143500 Sobic008G050400--Sobic005G143500 Sobic002G274200 Sobic002G274200 Sobic008G050400--Sobic002G274200 Sobic008G050400--Sobic002G401800 Sobic001G083100 Sobic001G083100 Sobic008G050400--Sobic001G083100 Sobic001G495200 Sobic001G495200 Sobic008G050400--Sobic001G495200 Sobic003G232700 Sobic003G232700 Sobic008G050400--Sobic003G232700 Sobic002G406700 Sobic002G406700 Sobic008G050400--Sobic002G406700 Sobic002G272100--Sobic002G401800 Sobic008G073100 Sobic008G073100 Sobic002G272100--Sobic008G073100 Sobic001G368500 Sobic001G368500 Sobic002G272100--Sobic001G368500 Sobic002G272100--Sobic008G050400 Sobic008G039600 Sobic008G039600 Sobic002G272100--Sobic008G039600 Sobic002G272100--Sobic002G351600 Sobic002G267900 Sobic002G267900 Sobic002G272100--Sobic002G267900 Sobic002G272100--Sobic001G083100 Sobic005G110400 Sobic005G110400 Sobic002G272100--Sobic005G110400 Sobic004G028300 Sobic004G028300 Sobic001G167900--Sobic004G028300 Sobic001G167900--Sobic004G124400 Sobic004G359600 Sobic004G359600 Sobic001G167900--Sobic004G359600 Sobic006G063900 Sobic006G063900 Sobic001G167900--Sobic006G063900 Sobic001G015200 Sobic001G015200 Sobic001G167900--Sobic001G015200 Sobic008G088821 Sobic008G088821 Sobic001G167900--Sobic008G088821 Sobic001G167900--Sobic002G351600 Sobic007G166300 Sobic007G166300 Sobic001G167900--Sobic007G166300 Sobic007G130400 Sobic007G130400 Sobic001G167900--Sobic007G130400 Sobic004G336200 Sobic004G336200 Sobic002G401800--Sobic004G336200 Sobic002G401800--Sobic008G073100 Sobic002G405100 Sobic002G405100 Sobic002G401800--Sobic002G405100 Sobic004G012900 Sobic004G012900 Sobic002G401800--Sobic004G012900 Sobic002G401800--Sobic002G272100 Sobic002G401800--Sobic005G110400 Sobic005G100300 Sobic005G100300 Sobic002G401800--Sobic005G100300 Sobic002G401800--Sobic001G368500 Sobic003G077400 Sobic003G077400 Sobic002G401800--Sobic003G077400 Sobic008G172700--Sobic002G267900 Sobic001G350000 Sobic001G350000 Sobic008G172700--Sobic001G350000 Sobic004G239100 Sobic004G239100 Sobic008G172700--Sobic004G239100 Sobic008G172700--Sobic004G055000 Sobic003G378600 Sobic003G378600 Sobic008G172700--Sobic003G378600 Sobic010G277600 Sobic010G277600 Sobic008G172700--Sobic010G277600 Sobic009G183700 Sobic009G183700 Sobic008G172700--Sobic009G183700 Sobic008G171300 Sobic008G171300 Sobic008G172700--Sobic008G171300 Sobic008G172700--Sobic004G359600 Sobic006G108200--Sobic003G275200 Sobic006G108200--Sobic002G351600 Sobic006G108200--Sobic004G055000 Sobic006G108200--Sobic004G028300 Sobic004G154800 Sobic004G154800 Sobic006G108200--Sobic004G154800 Sobic002G200900 Sobic002G200900 Sobic006G108200--Sobic002G200900 Sobic001G220000 Sobic001G220000 Sobic006G108200--Sobic001G220000 Sobic006G108200--Sobic001G167900 Sobic005G134100 Sobic005G134100 Sobic006G108200--Sobic005G134100 Sobic004G055000--Sobic003G275200 Sobic004G055000--Sobic004G154800 Sobic004G055000--Sobic008G172700 Sobic004G055000--Sobic002G267900 Sobic009G131800 Sobic009G131800 Sobic004G055000--Sobic009G131800 Sobic004G326500 Sobic004G326500 Sobic004G055000--Sobic004G326500 Sobic004G055000--Sobic002G351600 Sobic004G055000--Sobic006G108200 Sobic004G055000--Sobic002G272100 Sobic005G028800 Sobic005G028800 Sobic004G124400--Sobic005G028800 Sobic004G124400--Sobic006G063900 Sobic004G124400--Sobic007G166300 Sobic004G124400--Sobic001G167900 Sobic010G231500 Sobic010G231500 Sobic004G124400--Sobic010G231500 Sobic002G061900 Sobic002G061900 Sobic004G124400--Sobic002G061900 Sobic006G097500 Sobic006G097500 Sobic004G124400--Sobic006G097500 Sobic001G436400 Sobic001G436400 Sobic004G124400--Sobic001G436400 Sobic004G124400--Sobic004G359600 Sobic003G275200--Sobic004G055000 Sobic003G275200--Sobic006G108200 Sobic003G275200--Sobic004G326500 Sobic003G275200--Sobic004G154800 Sobic003G275200--Sobic008G172700 Sobic003G275200--Sobic002G351600 Sobic003G275200--Sobic001G350000 Sobic003G275200--Sobic008G039600 Sobic003G275200--Sobic002G272100
Octagon: transcription factors


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