Gene annotation
| Transcriptome id | Sobic.005G143500.1 |
|---|---|
| Synonym | Sb05g020870, GATB |
| Functional annotation | aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed |
| UniProt | C5Y3V8 |
| Pfam | PF02637 PF02934 |
| Panther DB | PTHR11659 PTHR11659:SF0 |
| NCBI CDD | - |
| KEGG Orthology | K02434; gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B |
| Gene Ontology | GO:0016884; carbon-nitrogen ligase activity, with glutamine as amido-N-donor GO:0016874ligase activity |
Orthologs (automatic annotation)
| TAIR | AT1G48520 : GLU-ADT subunit B |
|---|---|
| RAP-DB (Rice) | LOC_Os11g34210.2 : aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed |
| MaizeGDB (Corn) | Zm00025a033546 |
| Brachypodium | KQJ88290 |
| Barley | HORVU2Hr1G063250.10 , HORVU2Hr1G063250.11 , HORVU2Hr1G063250.12 , HORVU2Hr1G063250.13 , HORVU2Hr1G063250.14 , HORVU2Hr1G063250.2 , HORVU2Hr1G063250.3 , HORVU2Hr1G063250.1 , HORVU2Hr1G063250.6 , HORVU2Hr1G063250.7 , HORVU2Hr1G063250.4 , HORVU2Hr1G063250.5 , HORVU2Hr1G063250.8 , HORVU2Hr1G063250.9 , HORVU6Hr1G018540.4 , HORVU6Hr1G018540.5 , HORVU6Hr1G018540.1 , HORVU6Hr1G018540.2 , HORVU6Hr1G018540.3 |
| Wheat | TraesCS6A02G102500 , TraesCS2A02G262700 , TraesCS2A02G262700 , TraesCS2D02G261300 , TraesCS6D02G091100 , TraesCS2B02G279400 , TraesCS2B02G279400 , TraesCS2D02G261300 , TraesCS6B02G130900 |
| Populus | - |
JBrowse
| Sobic.005G143500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G110400 | pentatricopeptide repeat protein PPR986-12, putative, expressed | - |
| 2 | Sobic.008G039600 | signal recognition particle 54 kDa protein, putative, expressed | K03106: SRP54, signal recognition particle subunit SRP54 |
| 3 | Sobic.001G368500 | ribosomal protein L6, putative, expressed | K02933: RP-L6, MRPL6, large subunit ribosomal protein L6 |
| 4 | Sobic.002G401800 | bifunctional thioredoxin reductase/thioredoxin, putative, expressed | K00384: trxB, thioredoxin reductase (NADPH) |
| 5 | Sobic.006G106400 | OsDegp5 - Putative Deg protease homologue, expressed | - |
| 6 | Sobic.002G272100 | expressed protein | - |
| 7 | Sobic.008G073100 | uncharacterized protein ycf45, putative, expressed | - |
| 8 | Sobic.001G495200 | Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed | K00383: GSR, glutathione reductase (NADPH) |
| 9 | Sobic.003G324700 | expressed protein | - |
| 10 | Sobic.003G271900 | expressed protein | - |
| 11 | Sobic.001G126300 | adenylosuccinate synthetase, chloroplast precursor, putative, expressed | K01939: purA, adenylosuccinate synthase |
| 12 | Sobic.008G050400 | 5-formyltetrahydrofolate cyclo-ligase, putative, expressed | - |
| 13 | Sobic.010G002000 | glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed | K14164: glycyl-tRNA synthetase |
| 14 | Sobic.001G469933 | - | K02946: RP-S10, MRPS10, small subunit ribosomal protein S10 |
| 15 | Sobic.001G083100 | Unnamed(PubMedID : 24676859)@WRKY4, expressed | - |
| 16 | Sobic.002G406700 | tyrosine-specific transport protein, putative, expressed | K03834: tyrosine-specific transport protein |
| 17 | Sobic.002G274200 | expressed protein | - |
| 18 | Sobic.002G181000 | chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed | - |
| 19 | Sobic.003G432500 | Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed | K03110: fused signal recognition particle receptor |
| 20 | Sobic.001G122400 | ribosomal protein S13p/S18e, putative, expressed | K02952: RP-S13, small subunit ribosomal protein S13 |
Gene co-expression network
Octagon: transcription factors
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