Gene annotation
Transcriptome id Sobic.008G073100.1
Synonym Sb08g006480
Functional annotation uncharacterized protein ycf45, putative, expressed
UniProt A0A1B6PC97
Pfam PF00004
Panther DB PTHR20953 PTHR20953:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G33290 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os12g10640.1 : uncharacterized protein ycf45, putative, expressed
MaizeGDB (Corn) Zm00025a000855
Brachypodium KQJ91875 , KQJ91874 , PNT68527 , PNT68526
Barley -
Wheat TraesCS5A02G120900 , TraesCS5A02G120900 , TraesCS5D02G118900 , TraesCS5D02G118900 , TraesCS5D02G118900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
2 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
3 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
4 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
5 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.001G309300 expressed protein -
7 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
8 Sobic.002G272100 expressed protein -
9 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
10 Sobic.004G012900 expressed protein -
11 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
12 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
13 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
14 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
15 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
16 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
17 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
18 Sobic.010G035400 expressed protein -
19 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
20 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B


Gene co-expression network
sample Sobic008G073100 Sobic008G073100 Sobic005G110400 Sobic005G110400 Sobic008G073100--Sobic005G110400 Sobic001G368500 Sobic001G368500 Sobic008G073100--Sobic001G368500 Sobic002G401800 Sobic002G401800 Sobic008G073100--Sobic002G401800 Sobic003G387100 Sobic003G387100 Sobic008G073100--Sobic003G387100 Sobic004G336200 Sobic004G336200 Sobic008G073100--Sobic004G336200 Sobic001G309300 Sobic001G309300 Sobic008G073100--Sobic001G309300 Sobic003G077400 Sobic003G077400 Sobic008G073100--Sobic003G077400 Sobic002G272100 Sobic002G272100 Sobic008G073100--Sobic002G272100 Sobic006G106400 Sobic006G106400 Sobic008G073100--Sobic006G106400 Sobic005G110400--Sobic008G073100 Sobic005G110400--Sobic001G368500 Sobic001G126300 Sobic001G126300 Sobic005G110400--Sobic001G126300 Sobic005G110400--Sobic002G401800 Sobic005G110400--Sobic004G336200 Sobic005G110400--Sobic003G387100 Sobic005G143500 Sobic005G143500 Sobic005G110400--Sobic005G143500 Sobic005G110400--Sobic003G077400 Sobic003G432500 Sobic003G432500 Sobic005G110400--Sobic003G432500 Sobic003G324700 Sobic003G324700 Sobic001G368500--Sobic003G324700 Sobic001G368500--Sobic005G110400 Sobic001G368500--Sobic003G432500 Sobic001G469933 Sobic001G469933 Sobic001G368500--Sobic001G469933 Sobic001G122400 Sobic001G122400 Sobic001G368500--Sobic001G122400 Sobic001G368500--Sobic008G073100 Sobic001G368500--Sobic002G401800 Sobic003G271900 Sobic003G271900 Sobic001G368500--Sobic003G271900 Sobic001G368500--Sobic005G143500 Sobic002G401800--Sobic004G336200 Sobic002G401800--Sobic008G073100 Sobic002G405100 Sobic002G405100 Sobic002G401800--Sobic002G405100 Sobic004G012900 Sobic004G012900 Sobic002G401800--Sobic004G012900 Sobic002G401800--Sobic002G272100 Sobic002G401800--Sobic005G110400 Sobic005G100300 Sobic005G100300 Sobic002G401800--Sobic005G100300 Sobic002G401800--Sobic001G368500 Sobic002G401800--Sobic003G077400 Sobic009G059300 Sobic009G059300 Sobic003G387100--Sobic009G059300 Sobic003G387100--Sobic004G336200 Sobic003G387100--Sobic008G073100 Sobic006G207800 Sobic006G207800 Sobic003G387100--Sobic006G207800 Sobic003G160800 Sobic003G160800 Sobic003G387100--Sobic003G160800 Sobic003G387100--Sobic005G110400 Sobic003G387100--Sobic004G012900 Sobic003G412900 Sobic003G412900 Sobic003G387100--Sobic003G412900 Sobic010G035400 Sobic010G035400 Sobic003G387100--Sobic010G035400 Sobic004G336200--Sobic002G401800 Sobic004G336200--Sobic010G035400 Sobic001G500600 Sobic001G500600 Sobic004G336200--Sobic001G500600 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic004G336200--Sobic005G110400 Sobic006G197300 Sobic006G197300 Sobic004G336200--Sobic006G197300 Sobic001G309300--Sobic008G073100 Sobic004G336000 Sobic004G336000 Sobic001G309300--Sobic004G336000 Sobic001G309300--Sobic009G059300 Sobic001G309300--Sobic003G387100 Sobic001G309300--Sobic005G110400 Sobic004G331700 Sobic004G331700 Sobic001G309300--Sobic004G331700 Sobic001G291900 Sobic001G291900 Sobic001G309300--Sobic001G291900 Sobic001G309300--Sobic004G012900 Sobic001G308200 Sobic001G308200 Sobic001G309300--Sobic001G308200 Sobic003G077400--Sobic001G469933 Sobic003G077400--Sobic008G073100 Sobic003G077400--Sobic005G110400 Sobic003G077400--Sobic004G012900 Sobic003G077400--Sobic001G368500 Sobic003G077400--Sobic002G401800 Sobic003G077400--Sobic003G387100 Sobic003G077400--Sobic003G160800 Sobic003G077400--Sobic004G336200 Sobic002G272100--Sobic002G401800 Sobic002G272100--Sobic008G073100 Sobic002G272100--Sobic001G368500 Sobic008G050400 Sobic008G050400 Sobic002G272100--Sobic008G050400 Sobic008G039600 Sobic008G039600 Sobic002G272100--Sobic008G039600 Sobic002G351600 Sobic002G351600 Sobic002G272100--Sobic002G351600 Sobic002G267900 Sobic002G267900 Sobic002G272100--Sobic002G267900 Sobic001G083100 Sobic001G083100 Sobic002G272100--Sobic001G083100 Sobic002G272100--Sobic005G110400 Sobic004G011300 Sobic004G011300 Sobic006G106400--Sobic004G011300 Sobic006G106400--Sobic008G073100 Sobic006G106400--Sobic008G039600 Sobic006G106400--Sobic001G368500 Sobic006G106400--Sobic005G143500 Sobic006G106400--Sobic002G401800 Sobic001G283700 Sobic001G283700 Sobic006G106400--Sobic001G283700 Sobic009G148500 Sobic009G148500 Sobic006G106400--Sobic009G148500 Sobic006G106400--Sobic002G272100
Octagon: transcription factors


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