Gene annotation
Transcriptome id Sobic.003G387100.1
Synonym VIPP1, PTAC4, Sb03g042550
Functional annotation membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
UniProt C5XET6
Pfam PF04012
Panther DB PTHR31088 PTHR31088:SF6
NCBI CDD -
KEGG Orthology K03969; phage shock protein A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65260 : plastid transcriptionally active 4
RAP-DB (Rice) LOC_Os01g67000.1 : membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a026451 , Zm00025a039456
Brachypodium KQK14724 , KQK10890
Barley HORVU3Hr1G091270.8 , HORVU3Hr1G091270.9 , HORVU3Hr1G091270.1 , HORVU3Hr1G091270.2 , HORVU3Hr1G091270.3 , HORVU3Hr1G091270.4 , HORVU3Hr1G091270.5 , HORVU3Hr1G091270.6 , HORVU3Hr1G091270.7
Wheat TraesCS3D02G403400 , TraesCS2A02G122000 , TraesCS2A02G122000 , TraesCS2A02G122000 , TraesCS3B02G442000 , TraesCS3A02G408300 , TraesCS2B02G144100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G387100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
2 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
3 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
4 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
5 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
6 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
7 Sobic.004G012900 expressed protein -
8 Sobic.003G412900 NAD(P)H dehydrogenase 18(PubMedID : 26465154)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
9 Sobic.010G035400 expressed protein -
10 Sobic.008G188600 glyoxalase family protein, putative, expressed -
11 Sobic.006G101500 expressed protein -
12 Sobic.007G052400 rubredoxin family protein, putative, expressed -
13 Sobic.001G005200 expressed protein -
14 Sobic.001G102800 expressed protein -
15 Sobic.001G309300 expressed protein -
16 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
17 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
18 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
19 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
20 Sobic.002G112400 PGR5-LIKE A(PubMedID : 26465154)@expressed protein -


Gene co-expression network
sample Sobic003G387100 Sobic003G387100 Sobic009G059300 Sobic009G059300 Sobic003G387100--Sobic009G059300 Sobic004G336200 Sobic004G336200 Sobic003G387100--Sobic004G336200 Sobic008G073100 Sobic008G073100 Sobic003G387100--Sobic008G073100 Sobic006G207800 Sobic006G207800 Sobic003G387100--Sobic006G207800 Sobic003G160800 Sobic003G160800 Sobic003G387100--Sobic003G160800 Sobic005G110400 Sobic005G110400 Sobic003G387100--Sobic005G110400 Sobic004G012900 Sobic004G012900 Sobic003G387100--Sobic004G012900 Sobic003G412900 Sobic003G412900 Sobic003G387100--Sobic003G412900 Sobic010G035400 Sobic010G035400 Sobic003G387100--Sobic010G035400 Sobic009G059300--Sobic003G387100 Sobic009G059300--Sobic004G012900 Sobic010G005500 Sobic010G005500 Sobic009G059300--Sobic010G005500 Sobic009G059300--Sobic006G207800 Sobic008G171300 Sobic008G171300 Sobic009G059300--Sobic008G171300 Sobic001G309300 Sobic001G309300 Sobic009G059300--Sobic001G309300 Sobic007G052400 Sobic007G052400 Sobic009G059300--Sobic007G052400 Sobic009G030900 Sobic009G030900 Sobic009G059300--Sobic009G030900 Sobic009G059300--Sobic008G073100 Sobic002G401800 Sobic002G401800 Sobic004G336200--Sobic002G401800 Sobic004G336200--Sobic010G035400 Sobic001G500600 Sobic001G500600 Sobic004G336200--Sobic001G500600 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic004G336200--Sobic005G110400 Sobic006G197300 Sobic006G197300 Sobic004G336200--Sobic006G197300 Sobic008G073100--Sobic005G110400 Sobic001G368500 Sobic001G368500 Sobic008G073100--Sobic001G368500 Sobic008G073100--Sobic002G401800 Sobic008G073100--Sobic003G387100 Sobic008G073100--Sobic004G336200 Sobic008G073100--Sobic001G309300 Sobic003G077400 Sobic003G077400 Sobic008G073100--Sobic003G077400 Sobic002G272100 Sobic002G272100 Sobic008G073100--Sobic002G272100 Sobic006G106400 Sobic006G106400 Sobic008G073100--Sobic006G106400 Sobic001G102800 Sobic001G102800 Sobic006G207800--Sobic001G102800 Sobic009G237100 Sobic009G237100 Sobic006G207800--Sobic009G237100 Sobic007G009200 Sobic007G009200 Sobic006G207800--Sobic007G009200 Sobic006G207800--Sobic003G387100 Sobic009G043000 Sobic009G043000 Sobic006G207800--Sobic009G043000 Sobic006G207800--Sobic010G035400 Sobic003G431700 Sobic003G431700 Sobic006G207800--Sobic003G431700 Sobic010G201700 Sobic010G201700 Sobic006G207800--Sobic010G201700 Sobic006G238200 Sobic006G238200 Sobic006G207800--Sobic006G238200 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic003G160800--Sobic010G035400 Sobic003G160800--Sobic003G387100 Sobic007G103400 Sobic007G103400 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic005G110400--Sobic008G073100 Sobic005G110400--Sobic001G368500 Sobic001G126300 Sobic001G126300 Sobic005G110400--Sobic001G126300 Sobic005G110400--Sobic002G401800 Sobic005G110400--Sobic004G336200 Sobic005G110400--Sobic003G387100 Sobic005G143500 Sobic005G143500 Sobic005G110400--Sobic005G143500 Sobic005G110400--Sobic003G077400 Sobic003G432500 Sobic003G432500 Sobic005G110400--Sobic003G432500 Sobic004G012900--Sobic007G052400 Sobic002G233700 Sobic002G233700 Sobic004G012900--Sobic002G233700 Sobic004G012900--Sobic002G401800 Sobic004G012900--Sobic010G005500 Sobic003G378600 Sobic003G378600 Sobic004G012900--Sobic003G378600 Sobic004G012900--Sobic009G059300 Sobic010G277600 Sobic010G277600 Sobic004G012900--Sobic010G277600 Sobic004G012900--Sobic003G387100 Sobic004G012900--Sobic008G171300 Sobic001G069000 Sobic001G069000 Sobic003G412900--Sobic001G069000 Sobic003G412900--Sobic003G387100 Sobic001G314200 Sobic001G314200 Sobic003G412900--Sobic001G314200 Sobic008G102000 Sobic008G102000 Sobic003G412900--Sobic008G102000 Sobic006G093900 Sobic006G093900 Sobic003G412900--Sobic006G093900 Sobic003G412900--Sobic009G059300 Sobic001G168800 Sobic001G168800 Sobic003G412900--Sobic001G168800 Sobic006G101500 Sobic006G101500 Sobic003G412900--Sobic006G101500 Sobic003G412900--Sobic009G030900 Sobic010G035400--Sobic007G103400 Sobic007G225500 Sobic007G225500 Sobic010G035400--Sobic007G225500 Sobic010G035400--Sobic004G336200 Sobic004G353100 Sobic004G353100 Sobic010G035400--Sobic004G353100 Sobic009G237000 Sobic009G237000 Sobic010G035400--Sobic009G237000 Sobic002G275300 Sobic002G275300 Sobic010G035400--Sobic002G275300 Sobic010G035400--Sobic003G160800 Sobic010G035400--Sobic006G207800 Sobic010G035400--Sobic003G387100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.