Gene annotation
Transcriptome id Sobic.004G336200.1
Synonym Sb04g036413, NCLPP6, NCLPP1, CLPP6
Functional annotation OsClp6 - Putative Clp protease homologue, expressed
UniProt C5XV47
Pfam PF00574
Panther DB PTHR10381 PTHR10381:SF8
NCBI CDD KOG0840; ATP-dependent Clp protease, proteolytic subunit
KEGG Orthology K01358; clpP, ATP-dependent Clp protease, protease subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11750 : CLP protease proteolytic subunit 6
RAP-DB (Rice) LOC_Os03g29810.1 : OsClp6 - Putative Clp protease homologue, expressed
MaizeGDB (Corn) Zm00025a022514 , Zm00025a016306
Brachypodium KQK21304 , KQK21305
Barley HORVU4Hr1G038160.2 , HORVU4Hr1G038160.3 , HORVU4Hr1G038160.1 , HORVU4Hr1G038160.6 , HORVU4Hr1G038160.4 , HORVU3Hr1G083440.1 , HORVU4Hr1G038160.5
Wheat TraesCS4D02G157200 , TraesCS4B02G165100 , TraesCS4A02G149900
Populus -


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cDNA sequences
Sobic.004G336200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
2 Sobic.010G035400 expressed protein -
3 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
4 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
5 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
6 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
7 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
8 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
9 Sobic.006G197300 expressed protein -
10 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
11 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
12 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
13 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
14 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
15 Sobic.007G103400 expressed protein -
16 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
17 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
18 Sobic.002G405100 elongation factor TS family protein, expressed K02357: tsf, elongation factor Ts
19 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
20 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain


Gene co-expression network
sample Sobic004G336200 Sobic004G336200 Sobic002G401800 Sobic002G401800 Sobic004G336200--Sobic002G401800 Sobic010G035400 Sobic010G035400 Sobic004G336200--Sobic010G035400 Sobic001G500600 Sobic001G500600 Sobic004G336200--Sobic001G500600 Sobic003G387100 Sobic003G387100 Sobic004G336200--Sobic003G387100 Sobic003G160800 Sobic003G160800 Sobic004G336200--Sobic003G160800 Sobic008G073100 Sobic008G073100 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic005G110400 Sobic005G110400 Sobic004G336200--Sobic005G110400 Sobic006G197300 Sobic006G197300 Sobic004G336200--Sobic006G197300 Sobic002G401800--Sobic004G336200 Sobic002G401800--Sobic008G073100 Sobic002G405100 Sobic002G405100 Sobic002G401800--Sobic002G405100 Sobic004G012900 Sobic004G012900 Sobic002G401800--Sobic004G012900 Sobic002G272100 Sobic002G272100 Sobic002G401800--Sobic002G272100 Sobic002G401800--Sobic005G110400 Sobic005G100300 Sobic005G100300 Sobic002G401800--Sobic005G100300 Sobic001G368500 Sobic001G368500 Sobic002G401800--Sobic001G368500 Sobic003G077400 Sobic003G077400 Sobic002G401800--Sobic003G077400 Sobic007G103400 Sobic007G103400 Sobic010G035400--Sobic007G103400 Sobic007G225500 Sobic007G225500 Sobic010G035400--Sobic007G225500 Sobic010G035400--Sobic004G336200 Sobic004G353100 Sobic004G353100 Sobic010G035400--Sobic004G353100 Sobic009G237000 Sobic009G237000 Sobic010G035400--Sobic009G237000 Sobic002G275300 Sobic002G275300 Sobic010G035400--Sobic002G275300 Sobic010G035400--Sobic003G160800 Sobic006G207800 Sobic006G207800 Sobic010G035400--Sobic006G207800 Sobic010G035400--Sobic003G387100 Sobic003G094350 Sobic003G094350 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic001G500600--Sobic006G197300 Sobic003G070900 Sobic003G070900 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic003G372900 Sobic003G372900 Sobic001G500600--Sobic003G372900 Sobic009G059300 Sobic009G059300 Sobic003G387100--Sobic009G059300 Sobic003G387100--Sobic004G336200 Sobic003G387100--Sobic008G073100 Sobic003G387100--Sobic006G207800 Sobic003G387100--Sobic003G160800 Sobic003G387100--Sobic005G110400 Sobic003G387100--Sobic004G012900 Sobic003G412900 Sobic003G412900 Sobic003G387100--Sobic003G412900 Sobic003G387100--Sobic010G035400 Sobic003G160800--Sobic004G336200 Sobic003G160800--Sobic005G100300 Sobic003G160800--Sobic010G035400 Sobic003G160800--Sobic003G387100 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic008G073100--Sobic005G110400 Sobic008G073100--Sobic001G368500 Sobic008G073100--Sobic002G401800 Sobic008G073100--Sobic003G387100 Sobic008G073100--Sobic004G336200 Sobic001G309300 Sobic001G309300 Sobic008G073100--Sobic001G309300 Sobic008G073100--Sobic003G077400 Sobic008G073100--Sobic002G272100 Sobic006G106400 Sobic006G106400 Sobic008G073100--Sobic006G106400 Sobic001G134700--Sobic004G336200 Sobic001G134700--Sobic005G100300 Sobic001G134700--Sobic003G160800 Sobic008G006100 Sobic008G006100 Sobic001G134700--Sobic008G006100 Sobic006G101500 Sobic006G101500 Sobic001G134700--Sobic006G101500 Sobic001G134700--Sobic001G500600 Sobic001G134700--Sobic008G073100 Sobic001G134700--Sobic005G110400 Sobic001G134700--Sobic003G387100 Sobic005G110400--Sobic008G073100 Sobic005G110400--Sobic001G368500 Sobic001G126300 Sobic001G126300 Sobic005G110400--Sobic001G126300 Sobic005G110400--Sobic002G401800 Sobic005G110400--Sobic004G336200 Sobic005G110400--Sobic003G387100 Sobic005G143500 Sobic005G143500 Sobic005G110400--Sobic005G143500 Sobic005G110400--Sobic003G077400 Sobic003G432500 Sobic003G432500 Sobic005G110400--Sobic003G432500 Sobic006G197300--Sobic001G500600 Sobic006G197300--Sobic004G336200 Sobic006G197300--Sobic003G232700 Sobic006G197300--Sobic003G094350 Sobic001G516901 Sobic001G516901 Sobic006G197300--Sobic001G516901 Sobic006G197300--Sobic003G070900 Sobic006G197300--Sobic003G287900 Sobic001G436400 Sobic001G436400 Sobic006G197300--Sobic001G436400 Sobic006G197300--Sobic007G103400
Octagon: transcription factors


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