Gene annotation
Transcriptome id Sobic.001G500600.5,Sobic.001G500600.4,Sobic.001G500600.3,Sobic.001G500600.2
Synonym Sb01g046770, SVR1
Functional annotation pseudouridine synthase family protein, putative, expressed
UniProt A0A1Z5SBA7 , A0A1Z5SBA3
Pfam PF00849 PF01479 PF01479 PF00849
Panther DB PTHR21600 PTHR21600:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis GO:0003723RNA binding GO:0009982pseudouridine synthase activity GO:0009451RNA modification GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT2G39140 : pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os03g05806.1 : pseudouridine synthase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a000702
Brachypodium KQK23602
Barley HORVU4Hr1G072220.12 , HORVU4Hr1G072220.18 , HORVU4Hr1G072220.13 , HORVU4Hr1G072220.11 , HORVU4Hr1G072220.17 , HORVU4Hr1G072220.16 , HORVU4Hr1G072220.15 , HORVU4Hr1G072220.14 , HORVU4Hr1G072220.10 , HORVU4Hr1G072220.9 , HORVU4Hr1G072220.8 , HORVU4Hr1G072220.3 , HORVU4Hr1G072220.2 , HORVU4Hr1G072220.1 , HORVU4Hr1G072220.7 , HORVU4Hr1G072220.6 , HORVU4Hr1G072220.5 , HORVU4Hr1G072220.4
Wheat TraesCS4B02G269400 , TraesCS4D02G268600 , TraesCS4A02G036500
Populus -


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cDNA sequences
Sobic.001G500600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
2 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
3 Sobic.006G197300 expressed protein -
4 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
5 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
6 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
7 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
8 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
9 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
10 Sobic.008G006100 MATE efflux protein, putative, expressed -
11 Sobic.003G233700 SET domain-containing protein, putative, expressed -
12 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
13 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
14 Sobic.001G516901 - -
15 Sobic.004G333400 COBW domain containing protein, putative, expressed -
16 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
18 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
19 Sobic.007G162600 uncharacterized protein all1601, putative, expressed K18010: 7-hydroxymethyl chlorophyll a reductase
20 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I


Gene co-expression network
sample Sobic001G500600 Sobic001G500600 Sobic003G094350 Sobic003G094350 Sobic001G500600--Sobic003G094350 Sobic004G336200 Sobic004G336200 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic003G070900 Sobic003G070900 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic003G372900 Sobic003G372900 Sobic001G500600--Sobic003G372900 Sobic003G094350--Sobic002G133900 Sobic003G094350--Sobic003G070900 Sobic003G094350--Sobic001G500600 Sobic003G094350--Sobic003G287900 Sobic005G100300 Sobic005G100300 Sobic003G094350--Sobic005G100300 Sobic002G028400 Sobic002G028400 Sobic003G094350--Sobic002G028400 Sobic003G094350--Sobic004G336200 Sobic010G002000 Sobic010G002000 Sobic003G094350--Sobic010G002000 Sobic004G353100 Sobic004G353100 Sobic003G094350--Sobic004G353100 Sobic002G401800 Sobic002G401800 Sobic004G336200--Sobic002G401800 Sobic010G035400 Sobic010G035400 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic003G387100 Sobic003G387100 Sobic004G336200--Sobic003G387100 Sobic003G160800 Sobic003G160800 Sobic004G336200--Sobic003G160800 Sobic008G073100 Sobic008G073100 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic005G110400 Sobic005G110400 Sobic004G336200--Sobic005G110400 Sobic004G336200--Sobic006G197300 Sobic006G197300--Sobic001G500600 Sobic006G197300--Sobic004G336200 Sobic006G197300--Sobic003G232700 Sobic006G197300--Sobic003G094350 Sobic001G516901 Sobic001G516901 Sobic006G197300--Sobic001G516901 Sobic006G197300--Sobic003G070900 Sobic006G197300--Sobic003G287900 Sobic001G436400 Sobic001G436400 Sobic006G197300--Sobic001G436400 Sobic007G103400 Sobic007G103400 Sobic006G197300--Sobic007G103400 Sobic003G070900--Sobic002G133900 Sobic003G070900--Sobic003G287900 Sobic009G170200 Sobic009G170200 Sobic003G070900--Sobic009G170200 Sobic003G070900--Sobic003G094350 Sobic001G118400 Sobic001G118400 Sobic003G070900--Sobic001G118400 Sobic003G070900--Sobic001G500600 Sobic003G070900--Sobic004G353100 Sobic008G074000 Sobic008G074000 Sobic003G070900--Sobic008G074000 Sobic008G006100 Sobic008G006100 Sobic003G070900--Sobic008G006100 Sobic003G141100--Sobic001G500600 Sobic004G328400 Sobic004G328400 Sobic003G141100--Sobic004G328400 Sobic003G141100--Sobic004G336200 Sobic003G141100--Sobic003G232700 Sobic003G141100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic003G141100--Sobic001G054100 Sobic009G148500 Sobic009G148500 Sobic003G141100--Sobic009G148500 Sobic003G141100--Sobic003G160800 Sobic005G002900 Sobic005G002900 Sobic003G141100--Sobic005G002900 Sobic003G232700--Sobic001G500600 Sobic003G232700--Sobic006G197300 Sobic002G181000 Sobic002G181000 Sobic003G232700--Sobic002G181000 Sobic002G043600 Sobic002G043600 Sobic003G232700--Sobic002G043600 Sobic001G495200 Sobic001G495200 Sobic003G232700--Sobic001G495200 Sobic003G232700--Sobic003G141100 Sobic003G352500 Sobic003G352500 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G301300 Sobic003G301300 Sobic003G232700--Sobic003G301300 Sobic003G287900--Sobic003G070900 Sobic003G287900--Sobic002G133900 Sobic003G287900--Sobic003G094350 Sobic003G233700 Sobic003G233700 Sobic003G287900--Sobic003G233700 Sobic003G287900--Sobic001G500600 Sobic003G287900--Sobic004G353100 Sobic003G287900--Sobic004G336200 Sobic003G287900--Sobic008G074000 Sobic003G287900--Sobic009G170200 Sobic002G133900--Sobic003G070900 Sobic002G133900--Sobic003G094350 Sobic002G133900--Sobic003G287900 Sobic002G405100 Sobic002G405100 Sobic002G133900--Sobic002G405100 Sobic002G133900--Sobic004G353100 Sobic002G133900--Sobic005G100300 Sobic002G133900--Sobic002G028400 Sobic002G133900--Sobic007G103400 Sobic002G133900--Sobic009G170200 Sobic003G372900--Sobic001G500600 Sobic003G372900--Sobic001G054100 Sobic001G083100 Sobic001G083100 Sobic003G372900--Sobic001G083100 Sobic002G406700 Sobic002G406700 Sobic003G372900--Sobic002G406700 Sobic003G372900--Sobic003G141100 Sobic003G372900--Sobic003G094350 Sobic003G372900--Sobic004G336200 Sobic004G333400 Sobic004G333400 Sobic003G372900--Sobic004G333400 Sobic006G280800 Sobic006G280800 Sobic003G372900--Sobic006G280800
Octagon: transcription factors


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