Gene annotation
Transcriptome id Sobic.008G006100.1
Synonym Sb08g000660
Functional annotation MATE efflux protein, putative, expressed
UniProt A0A109NDV3 , A0A1B6PB31
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF101
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT2G38330 : MATE efflux family protein
RAP-DB (Rice) LOC_Os12g01580.1 : MATE efflux protein, putative, expressed
MaizeGDB (Corn) Zm00025a040467 , Zm00025a013207 , Zm00025a013210
Brachypodium KQJ92618 , KQJ92619 , KQJ89614
Barley HORVU4Hr1G024560.22 , HORVU4Hr1G024560.23 , HORVU4Hr1G024560.20 , HORVU4Hr1G024560.21 , HORVU4Hr1G024560.26 , HORVU4Hr1G024560.27 , HORVU4Hr1G024560.24 , HORVU4Hr1G024560.25 , HORVU4Hr1G024560.28 , HORVU4Hr1G024560.8 , HORVU4Hr1G024560.2 , HORVU4Hr1G024560.1 , HORVU4Hr1G024560.7 , HORVU4Hr1G024560.6 , HORVU4Hr1G024560.5 , HORVU4Hr1G024560.4 , HORVU4Hr1G024560.19 , HORVU4Hr1G024560.18 , HORVU4Hr1G024560.13 , HORVU4Hr1G024560.12 , HORVU4Hr1G024560.11 , HORVU4Hr1G024560.10 , HORVU4Hr1G024560.17 , HORVU4Hr1G024560.16 , HORVU4Hr1G024560.15 , HORVU4Hr1G024560.14 , HORVU4Hr1G024560.35 , HORVU4Hr1G024560.34 , HORVU4Hr1G024560.31 , HORVU4Hr1G024560.30 , HORVU4Hr1G024560.33 , HORVU4Hr1G024560.32 , HORVU4Hr1G024560.29
Wheat TraesCS5D02G157000 , TraesCS4A02G180600 , TraesCS4A02G180600 , TraesCS5B02G150400 , TraesCS5A02G151800 , TraesCS5A02G151800 , TraesCS4D02G131900 , TraesCS5B02G150400 , TraesCS5D02G157000 , TraesCS5D02G157000
Populus -


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cDNA sequences
Sobic.008G006100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G112400 PGR5-LIKE A(PubMedID : 26465154)@expressed protein -
2 Sobic.001G128600 -(PubMedID : 26465154)@DUF1517 domain containing protein, putative, expressed -
3 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
4 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
5 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
6 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
7 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
8 Sobic.003G233700 SET domain-containing protein, putative, expressed -
9 Sobic.007G103400 expressed protein -
10 Sobic.008G074000 OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
11 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
12 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.009G056700 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed K01103: 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 3
14 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
15 Sobic.003G037300 Twin LOV 1, putative, expressed -
16 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
17 Sobic.006G101500 expressed protein -
18 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
19 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
20 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1


Gene co-expression network
sample Sobic008G006100 Sobic008G006100 Sobic002G112400 Sobic002G112400 Sobic008G006100--Sobic002G112400 Sobic001G128600 Sobic001G128600 Sobic008G006100--Sobic001G128600 Sobic009G062400 Sobic009G062400 Sobic008G006100--Sobic009G062400 Sobic001G500600 Sobic001G500600 Sobic008G006100--Sobic001G500600 Sobic003G070900 Sobic003G070900 Sobic008G006100--Sobic003G070900 Sobic009G237000 Sobic009G237000 Sobic008G006100--Sobic009G237000 Sobic001G134700 Sobic001G134700 Sobic008G006100--Sobic001G134700 Sobic003G233700 Sobic003G233700 Sobic008G006100--Sobic003G233700 Sobic007G103400 Sobic007G103400 Sobic008G006100--Sobic007G103400 Sobic002G112400--Sobic001G128600 Sobic002G112400--Sobic008G006100 Sobic003G160800 Sobic003G160800 Sobic002G112400--Sobic003G160800 Sobic002G112400--Sobic009G062400 Sobic006G265900 Sobic006G265900 Sobic002G112400--Sobic006G265900 Sobic001G122300 Sobic001G122300 Sobic002G112400--Sobic001G122300 Sobic009G056700 Sobic009G056700 Sobic002G112400--Sobic009G056700 Sobic002G112400--Sobic009G237000 Sobic003G387100 Sobic003G387100 Sobic002G112400--Sobic003G387100 Sobic001G128600--Sobic002G112400 Sobic001G128600--Sobic006G265900 Sobic001G128600--Sobic008G006100 Sobic001G128600--Sobic001G122300 Sobic001G005200 Sobic001G005200 Sobic001G128600--Sobic001G005200 Sobic005G100300 Sobic005G100300 Sobic001G128600--Sobic005G100300 Sobic002G298800 Sobic002G298800 Sobic001G128600--Sobic002G298800 Sobic009G175500 Sobic009G175500 Sobic001G128600--Sobic009G175500 Sobic006G097500 Sobic006G097500 Sobic001G128600--Sobic006G097500 Sobic009G062400--Sobic008G006100 Sobic009G062400--Sobic002G112400 Sobic009G207900 Sobic009G207900 Sobic009G062400--Sobic009G207900 Sobic009G219100 Sobic009G219100 Sobic009G062400--Sobic009G219100 Sobic003G037300 Sobic003G037300 Sobic009G062400--Sobic003G037300 Sobic004G154400 Sobic004G154400 Sobic009G062400--Sobic004G154400 Sobic001G286600 Sobic001G286600 Sobic009G062400--Sobic001G286600 Sobic003G345500 Sobic003G345500 Sobic009G062400--Sobic003G345500 Sobic003G284800 Sobic003G284800 Sobic009G062400--Sobic003G284800 Sobic003G094350 Sobic003G094350 Sobic001G500600--Sobic003G094350 Sobic004G336200 Sobic004G336200 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic003G372900 Sobic003G372900 Sobic001G500600--Sobic003G372900 Sobic003G070900--Sobic002G133900 Sobic003G070900--Sobic003G287900 Sobic009G170200 Sobic009G170200 Sobic003G070900--Sobic009G170200 Sobic003G070900--Sobic003G094350 Sobic001G118400 Sobic001G118400 Sobic003G070900--Sobic001G118400 Sobic003G070900--Sobic001G500600 Sobic004G353100 Sobic004G353100 Sobic003G070900--Sobic004G353100 Sobic008G074000 Sobic008G074000 Sobic003G070900--Sobic008G074000 Sobic003G070900--Sobic008G006100 Sobic009G237000--Sobic007G103400 Sobic009G237000--Sobic004G353100 Sobic006G102000 Sobic006G102000 Sobic009G237000--Sobic006G102000 Sobic009G237000--Sobic002G298800 Sobic010G035400 Sobic010G035400 Sobic009G237000--Sobic010G035400 Sobic001G504400 Sobic001G504400 Sobic009G237000--Sobic001G504400 Sobic009G237000--Sobic003G233700 Sobic007G108900 Sobic007G108900 Sobic009G237000--Sobic007G108900 Sobic009G237000--Sobic008G074000 Sobic001G134700--Sobic004G336200 Sobic001G134700--Sobic005G100300 Sobic001G134700--Sobic003G160800 Sobic001G134700--Sobic008G006100 Sobic006G101500 Sobic006G101500 Sobic001G134700--Sobic006G101500 Sobic001G134700--Sobic001G500600 Sobic008G073100 Sobic008G073100 Sobic001G134700--Sobic008G073100 Sobic005G110400 Sobic005G110400 Sobic001G134700--Sobic005G110400 Sobic001G134700--Sobic003G387100 Sobic003G233700--Sobic007G103400 Sobic003G233700--Sobic003G287900 Sobic003G233700--Sobic004G353100 Sobic003G233700--Sobic002G133900 Sobic003G233700--Sobic009G237000 Sobic003G233700--Sobic003G160800 Sobic003G233700--Sobic008G074000 Sobic003G233700--Sobic003G094350 Sobic003G233700--Sobic001G500600 Sobic007G103400--Sobic009G237000 Sobic007G103400--Sobic002G298800 Sobic007G103400--Sobic004G353100 Sobic007G103400--Sobic010G035400 Sobic007G103400--Sobic001G504400 Sobic003G306200 Sobic003G306200 Sobic007G103400--Sobic003G306200 Sobic002G198300 Sobic002G198300 Sobic007G103400--Sobic002G198300 Sobic007G103400--Sobic003G233700 Sobic002G275300 Sobic002G275300 Sobic007G103400--Sobic002G275300
Octagon: transcription factors


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