Gene annotation
Transcriptome id Sobic.001G128600.1
Synonym Sb01g011280
Functional annotation - (PubMedID : 26465154)
DUF1517 domain containing protein, putative, expressed
UniProt C5WNX4
Pfam PF07466
Panther DB PTHR33975 PTHR33975:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G54520 : -
RAP-DB (Rice) LOC_Os03g48920.1 : DUF1517 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007689 , Zm00025a017071
Brachypodium KQK13686
Barley HORVU0Hr1G040350.2 , HORVU0Hr1G040350.3 , HORVU7Hr1G091780.2 , HORVU7Hr1G091780.3
Wheat TraesCS4A02G277800 , TraesCS4D02G033300 , TraesCS4B02G035300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G128600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G112400 PGR5-LIKE A(PubMedID : 26465154)@expressed protein -
2 Sobic.006G265900 thioredoxin, putative, expressed K03671: thioredoxin 1
3 Sobic.008G006100 MATE efflux protein, putative, expressed -
4 Sobic.001G122300 PAP fibrillin family domain containing protein, expressed -
5 Sobic.001G005200 expressed protein -
6 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
7 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
8 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
9 Sobic.006G097500 zeaxanthin epoxidase, chloroplast precursor, putative, expressed K09838: ZEP, zeaxanthin epoxidase
10 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
11 Sobic.010G201600 tic21, putative, expressed -
12 Sobic.002G233700 -(PubMedID : 26976818)@dicarboxylate transporter 2(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
13 Sobic.002G061900 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
14 Sobic.004G303200 cytochrome b561, putative, expressed K08360: cytochrome b-561
15 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
16 Sobic.007G103400 expressed protein -
17 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
19 Sobic.007G053800 RNA polymerase sigma factor, putative, expressed K03086: RNA polymerase primary sigma factor
20 Sobic.003G148200 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G128600 Sobic001G128600 Sobic002G112400 Sobic002G112400 Sobic001G128600--Sobic002G112400 Sobic006G265900 Sobic006G265900 Sobic001G128600--Sobic006G265900 Sobic008G006100 Sobic008G006100 Sobic001G128600--Sobic008G006100 Sobic001G122300 Sobic001G122300 Sobic001G128600--Sobic001G122300 Sobic001G005200 Sobic001G005200 Sobic001G128600--Sobic001G005200 Sobic005G100300 Sobic005G100300 Sobic001G128600--Sobic005G100300 Sobic002G298800 Sobic002G298800 Sobic001G128600--Sobic002G298800 Sobic009G175500 Sobic009G175500 Sobic001G128600--Sobic009G175500 Sobic006G097500 Sobic006G097500 Sobic001G128600--Sobic006G097500 Sobic002G112400--Sobic001G128600 Sobic002G112400--Sobic008G006100 Sobic003G160800 Sobic003G160800 Sobic002G112400--Sobic003G160800 Sobic009G062400 Sobic009G062400 Sobic002G112400--Sobic009G062400 Sobic002G112400--Sobic006G265900 Sobic002G112400--Sobic001G122300 Sobic009G056700 Sobic009G056700 Sobic002G112400--Sobic009G056700 Sobic009G237000 Sobic009G237000 Sobic002G112400--Sobic009G237000 Sobic003G387100 Sobic003G387100 Sobic002G112400--Sobic003G387100 Sobic006G265900--Sobic001G128600 Sobic006G265900--Sobic006G097500 Sobic002G061900 Sobic002G061900 Sobic006G265900--Sobic002G061900 Sobic003G148200 Sobic003G148200 Sobic006G265900--Sobic003G148200 Sobic006G265900--Sobic002G298800 Sobic006G265900--Sobic002G112400 Sobic007G169100 Sobic007G169100 Sobic006G265900--Sobic007G169100 Sobic007G053800 Sobic007G053800 Sobic006G265900--Sobic007G053800 Sobic004G359600 Sobic004G359600 Sobic006G265900--Sobic004G359600 Sobic008G006100--Sobic002G112400 Sobic008G006100--Sobic001G128600 Sobic008G006100--Sobic009G062400 Sobic001G500600 Sobic001G500600 Sobic008G006100--Sobic001G500600 Sobic003G070900 Sobic003G070900 Sobic008G006100--Sobic003G070900 Sobic008G006100--Sobic009G237000 Sobic001G134700 Sobic001G134700 Sobic008G006100--Sobic001G134700 Sobic003G233700 Sobic003G233700 Sobic008G006100--Sobic003G233700 Sobic007G103400 Sobic007G103400 Sobic008G006100--Sobic007G103400 Sobic001G122300--Sobic001G128600 Sobic009G140600 Sobic009G140600 Sobic001G122300--Sobic009G140600 Sobic003G378600 Sobic003G378600 Sobic001G122300--Sobic003G378600 Sobic001G122300--Sobic001G005200 Sobic004G012900 Sobic004G012900 Sobic001G122300--Sobic004G012900 Sobic001G122300--Sobic002G112400 Sobic010G245200 Sobic010G245200 Sobic001G122300--Sobic010G245200 Sobic003G002300 Sobic003G002300 Sobic001G122300--Sobic003G002300 Sobic001G122300--Sobic006G265900 Sobic001G005200--Sobic003G378600 Sobic001G005200--Sobic001G128600 Sobic008G102000 Sobic008G102000 Sobic001G005200--Sobic008G102000 Sobic001G005200--Sobic009G140600 Sobic001G005200--Sobic009G175500 Sobic001G005200--Sobic010G245200 Sobic002G233700 Sobic002G233700 Sobic001G005200--Sobic002G233700 Sobic001G005200--Sobic003G387100 Sobic001G005200--Sobic001G122300 Sobic002G405100 Sobic002G405100 Sobic005G100300--Sobic002G405100 Sobic002G133900 Sobic002G133900 Sobic005G100300--Sobic002G133900 Sobic010G201600 Sobic010G201600 Sobic005G100300--Sobic010G201600 Sobic003G094350 Sobic003G094350 Sobic005G100300--Sobic003G094350 Sobic005G100300--Sobic003G160800 Sobic005G100300--Sobic001G128600 Sobic002G401800 Sobic002G401800 Sobic005G100300--Sobic002G401800 Sobic005G100300--Sobic001G134700 Sobic004G353100 Sobic004G353100 Sobic005G100300--Sobic004G353100 Sobic001G393300 Sobic001G393300 Sobic002G298800--Sobic001G393300 Sobic002G198300 Sobic002G198300 Sobic002G298800--Sobic002G198300 Sobic004G103300 Sobic004G103300 Sobic002G298800--Sobic004G103300 Sobic002G298800--Sobic007G103400 Sobic002G298800--Sobic006G097500 Sobic001G368600 Sobic001G368600 Sobic002G298800--Sobic001G368600 Sobic003G094100 Sobic003G094100 Sobic002G298800--Sobic003G094100 Sobic002G298800--Sobic004G353100 Sobic002G275300 Sobic002G275300 Sobic002G298800--Sobic002G275300 Sobic009G175500--Sobic001G005200 Sobic004G336200 Sobic004G336200 Sobic009G175500--Sobic004G336200 Sobic009G175500--Sobic001G128600 Sobic009G175500--Sobic003G160800 Sobic009G175500--Sobic003G387100 Sobic009G175500--Sobic001G500600 Sobic001G283700 Sobic001G283700 Sobic009G175500--Sobic001G283700 Sobic001G126300 Sobic001G126300 Sobic009G175500--Sobic001G126300 Sobic010G035400 Sobic010G035400 Sobic009G175500--Sobic010G035400 Sobic006G097500--Sobic002G061900 Sobic006G097500--Sobic002G298800 Sobic006G097500--Sobic004G103300 Sobic006G097500--Sobic006G265900 Sobic006G097500--Sobic001G368600 Sobic010G231500 Sobic010G231500 Sobic006G097500--Sobic010G231500 Sobic006G097500--Sobic007G169100 Sobic005G005400 Sobic005G005400 Sobic006G097500--Sobic005G005400 Sobic005G028800 Sobic005G028800 Sobic006G097500--Sobic005G028800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.