Gene annotation
Transcriptome id Sobic.007G053800.1
Synonym SIG1, RPOD1, Sb07g004340, SIG2, SIGA, SIGB
Functional annotation RNA polymerase sigma factor, putative, expressed
UniProt O24348 , C5YHG2
Pfam PF04545 PF04542 PF04539
Panther DB PTHR30603 PTHR30603:SF14
NCBI CDD -
KEGG Orthology K03086; RNA polymerase primary sigma factor
Gene Ontology GO:0016987; sigma factor activity GO:0006355regulation of transcription, DNA-templated GO:0006352DNA-templated transcription, initiation GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G64860 : sigma factor A
RAP-DB (Rice) LOC_Os08g06630.1 : RNA polymerase sigma factor, putative, expressed
MaizeGDB (Corn) Zm00025a055070 , Zm00025a030038
Brachypodium KQJ95249
Barley -
Wheat TraesCS7A02G297900 , TraesCS7A02G297900 , TraesCS7D02G292000
Populus -


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cDNA sequences
Sobic.007G053800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G245200 expressed protein -
2 Sobic.006G265900 thioredoxin, putative, expressed K03671: thioredoxin 1
3 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
4 Sobic.001G128600 -(PubMedID : 26465154)@DUF1517 domain containing protein, putative, expressed -
5 Sobic.001G122300 PAP fibrillin family domain containing protein, expressed -
6 Sobic.001G500700 expressed protein -
7 Sobic.002G370600 - -
8 Sobic.003G148200 RNA recognition motif containing protein, putative, expressed -
9 Sobic.006G188000 expressed protein -
10 Sobic.001G005200 expressed protein -
11 Sobic.001G003200 RNApolymerase sigma-subunit F(PubMedID : 26465154)@RNA polymerase sigma factor, putative, expressed K03086: RNA polymerase primary sigma factor
12 Sobic.002G112400 PGR5-LIKE A(PubMedID : 26465154)@expressed protein -
13 Sobic.008G006100 MATE efflux protein, putative, expressed -
14 Sobic.009G056700 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed K01103: 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 3
15 Sobic.006G097500 zeaxanthin epoxidase, chloroplast precursor, putative, expressed K09838: ZEP, zeaxanthin epoxidase
16 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
17 Sobic.003G284800 heat shock protein DnaJ, putative, expressed -
18 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
19 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
20 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic007G053800 Sobic007G053800 Sobic010G245200 Sobic010G245200 Sobic007G053800--Sobic010G245200 Sobic006G265900 Sobic006G265900 Sobic007G053800--Sobic006G265900 Sobic003G431700 Sobic003G431700 Sobic007G053800--Sobic003G431700 Sobic001G128600 Sobic001G128600 Sobic007G053800--Sobic001G128600 Sobic001G122300 Sobic001G122300 Sobic007G053800--Sobic001G122300 Sobic001G500700 Sobic001G500700 Sobic007G053800--Sobic001G500700 Sobic002G370600 Sobic002G370600 Sobic007G053800--Sobic002G370600 Sobic003G148200 Sobic003G148200 Sobic007G053800--Sobic003G148200 Sobic006G188000 Sobic006G188000 Sobic007G053800--Sobic006G188000 Sobic010G245200--Sobic007G053800 Sobic010G245200--Sobic002G370600 Sobic001G005200 Sobic001G005200 Sobic010G245200--Sobic001G005200 Sobic010G245200--Sobic003G431700 Sobic009G140600 Sobic009G140600 Sobic010G245200--Sobic009G140600 Sobic010G245200--Sobic001G122300 Sobic010G245200--Sobic006G188000 Sobic003G378600 Sobic003G378600 Sobic010G245200--Sobic003G378600 Sobic008G102000 Sobic008G102000 Sobic010G245200--Sobic008G102000 Sobic006G265900--Sobic001G128600 Sobic006G097500 Sobic006G097500 Sobic006G265900--Sobic006G097500 Sobic002G061900 Sobic002G061900 Sobic006G265900--Sobic002G061900 Sobic006G265900--Sobic003G148200 Sobic002G298800 Sobic002G298800 Sobic006G265900--Sobic002G298800 Sobic002G112400 Sobic002G112400 Sobic006G265900--Sobic002G112400 Sobic007G169100 Sobic007G169100 Sobic006G265900--Sobic007G169100 Sobic006G265900--Sobic007G053800 Sobic004G359600 Sobic004G359600 Sobic006G265900--Sobic004G359600 Sobic001G519800 Sobic001G519800 Sobic003G431700--Sobic001G519800 Sobic003G398800 Sobic003G398800 Sobic003G431700--Sobic003G398800 Sobic006G207800 Sobic006G207800 Sobic003G431700--Sobic006G207800 Sobic003G431700--Sobic002G370600 Sobic006G238200 Sobic006G238200 Sobic003G431700--Sobic006G238200 Sobic004G308700 Sobic004G308700 Sobic003G431700--Sobic004G308700 Sobic004G272100 Sobic004G272100 Sobic003G431700--Sobic004G272100 Sobic010G181300 Sobic010G181300 Sobic003G431700--Sobic010G181300 Sobic001G102800 Sobic001G102800 Sobic003G431700--Sobic001G102800 Sobic001G128600--Sobic002G112400 Sobic001G128600--Sobic006G265900 Sobic008G006100 Sobic008G006100 Sobic001G128600--Sobic008G006100 Sobic001G128600--Sobic001G122300 Sobic001G128600--Sobic001G005200 Sobic005G100300 Sobic005G100300 Sobic001G128600--Sobic005G100300 Sobic001G128600--Sobic002G298800 Sobic009G175500 Sobic009G175500 Sobic001G128600--Sobic009G175500 Sobic001G128600--Sobic006G097500 Sobic001G122300--Sobic001G128600 Sobic001G122300--Sobic009G140600 Sobic001G122300--Sobic003G378600 Sobic001G122300--Sobic001G005200 Sobic004G012900 Sobic004G012900 Sobic001G122300--Sobic004G012900 Sobic001G122300--Sobic002G112400 Sobic001G122300--Sobic010G245200 Sobic003G002300 Sobic003G002300 Sobic001G122300--Sobic003G002300 Sobic001G122300--Sobic006G265900 Sobic001G500700--Sobic006G265900 Sobic001G500700--Sobic007G053800 Sobic001G500700--Sobic006G097500 Sobic001G500700--Sobic010G245200 Sobic001G500700--Sobic002G298800 Sobic006G102000 Sobic006G102000 Sobic001G500700--Sobic006G102000 Sobic001G500700--Sobic001G122300 Sobic001G500700--Sobic010G181300 Sobic007G108900 Sobic007G108900 Sobic001G500700--Sobic007G108900 Sobic004G305800 Sobic004G305800 Sobic002G370600--Sobic004G305800 Sobic001G491000 Sobic001G491000 Sobic002G370600--Sobic001G491000 Sobic002G370600--Sobic010G181300 Sobic002G370600--Sobic006G238200 Sobic002G370600--Sobic010G245200 Sobic002G370600--Sobic003G431700 Sobic001G289500 Sobic001G289500 Sobic002G370600--Sobic001G289500 Sobic003G370000 Sobic003G370000 Sobic002G370600--Sobic003G370000 Sobic009G043000 Sobic009G043000 Sobic002G370600--Sobic009G043000 Sobic003G148200--Sobic006G265900 Sobic003G148200--Sobic001G128600 Sobic003G148200--Sobic007G053800 Sobic002G275300 Sobic002G275300 Sobic003G148200--Sobic002G275300 Sobic003G148200--Sobic001G122300 Sobic003G148200--Sobic006G097500 Sobic003G148200--Sobic010G245200 Sobic003G148200--Sobic003G431700 Sobic003G148200--Sobic002G298800 Sobic006G188000--Sobic010G245200 Sobic010G058200 Sobic010G058200 Sobic006G188000--Sobic010G058200 Sobic006G114900 Sobic006G114900 Sobic006G188000--Sobic006G114900 Sobic006G188000--Sobic002G370600 Sobic006G188000--Sobic003G431700 Sobic006G188000--Sobic007G053800 Sobic001G517700 Sobic001G517700 Sobic006G188000--Sobic001G517700 Sobic006G188000--Sobic006G207800 Sobic006G188000--Sobic006G102000
Octagon: transcription factors


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