Gene annotation
Transcriptome id Sobic.001G003200.4
Synonym SOLDAT8, ATSIG6, SIG6, Sb01g000390, SIGF
Functional annotation RNApolymerase sigma-subunit F (PubMedID : 26465154)
RNA polymerase sigma factor, putative, expressed
UniProt A0A1B6QGM6
Pfam PF04545 PF04539 PF04542
Panther DB PTHR30603 PTHR30603:SF9
NCBI CDD -
KEGG Orthology K03086; RNA polymerase primary sigma factor
Gene Ontology GO:0016987; sigma factor activity GO:0006355regulation of transcription, DNA-templated GO:0006352DNA-templated transcription, initiation GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G36990 : RNApolymerase sigma-subunit F
RAP-DB (Rice) LOC_Os08g14450.1 : RNA polymerase sigma factor, putative, expressed
MaizeGDB (Corn) Zm00025a016283
Brachypodium -
Barley -
Wheat TraesCS5D02G551200 , TraesCS5B02G563800 , TraesCS5B02G563800 , TraesCS5B02G563800 , TraesCS4A02G315700 , TraesCS4A02G315700 , TraesCS4A02G315700
Populus -


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cDNA sequences
Sobic.001G003200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G056700 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed K01103: 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 3
2 Sobic.007G053800 RNA polymerase sigma factor, putative, expressed K03086: RNA polymerase primary sigma factor
3 Sobic.004G121400 CAX 1c(PubMedID : 22196357)@cation exchanger 3(PubMedID : 26320239)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
4 Sobic.007G150100 HD domain containing protein, putative, expressed -
5 Sobic.006G188000 expressed protein -
6 Sobic.003G398800 expressed protein -
7 Sobic.001G048400 pheophorbide a oxygenase, chloroplast precursor, putative, expressed -
8 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
9 Sobic.001G504400 expressed protein -
10 Sobic.002G112400 PGR5-LIKE A(PubMedID : 26465154)@expressed protein -
11 Sobic.008G094000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
12 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
13 Sobic.003G037300 Twin LOV 1, putative, expressed -
14 Sobic.001G512500 expressed protein -
15 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
16 Sobic.008G006100 MATE efflux protein, putative, expressed -
17 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
18 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
19 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.003G110800 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8


Gene co-expression network
sample Sobic001G003200 Sobic001G003200 Sobic009G056700 Sobic009G056700 Sobic001G003200--Sobic009G056700 Sobic007G053800 Sobic007G053800 Sobic001G003200--Sobic007G053800 Sobic004G121400 Sobic004G121400 Sobic001G003200--Sobic004G121400 Sobic007G150100 Sobic007G150100 Sobic001G003200--Sobic007G150100 Sobic006G188000 Sobic006G188000 Sobic001G003200--Sobic006G188000 Sobic003G398800 Sobic003G398800 Sobic001G003200--Sobic003G398800 Sobic001G048400 Sobic001G048400 Sobic001G003200--Sobic001G048400 Sobic003G431700 Sobic003G431700 Sobic001G003200--Sobic003G431700 Sobic001G504400 Sobic001G504400 Sobic001G003200--Sobic001G504400 Sobic009G056700--Sobic003G398800 Sobic009G056700--Sobic003G431700 Sobic002G112400 Sobic002G112400 Sobic009G056700--Sobic002G112400 Sobic007G103400 Sobic007G103400 Sobic009G056700--Sobic007G103400 Sobic003G306200 Sobic003G306200 Sobic009G056700--Sobic003G306200 Sobic008G006100 Sobic008G006100 Sobic009G056700--Sobic008G006100 Sobic002G275300 Sobic002G275300 Sobic009G056700--Sobic002G275300 Sobic002G298800 Sobic002G298800 Sobic009G056700--Sobic002G298800 Sobic001G128600 Sobic001G128600 Sobic009G056700--Sobic001G128600 Sobic010G245200 Sobic010G245200 Sobic007G053800--Sobic010G245200 Sobic006G265900 Sobic006G265900 Sobic007G053800--Sobic006G265900 Sobic007G053800--Sobic003G431700 Sobic007G053800--Sobic001G128600 Sobic001G122300 Sobic001G122300 Sobic007G053800--Sobic001G122300 Sobic001G500700 Sobic001G500700 Sobic007G053800--Sobic001G500700 Sobic002G370600 Sobic002G370600 Sobic007G053800--Sobic002G370600 Sobic003G148200 Sobic003G148200 Sobic007G053800--Sobic003G148200 Sobic007G053800--Sobic006G188000 Sobic004G121400--Sobic003G398800 Sobic004G121400--Sobic001G003200 Sobic004G154200 Sobic004G154200 Sobic004G121400--Sobic004G154200 Sobic004G121400--Sobic001G048400 Sobic003G185900 Sobic003G185900 Sobic004G121400--Sobic003G185900 Sobic003G367500 Sobic003G367500 Sobic004G121400--Sobic003G367500 Sobic004G121400--Sobic009G056700 Sobic004G308700 Sobic004G308700 Sobic004G121400--Sobic004G308700 Sobic010G125833 Sobic010G125833 Sobic004G121400--Sobic010G125833 Sobic007G150100--Sobic001G003200 Sobic006G173600 Sobic006G173600 Sobic007G150100--Sobic006G173600 Sobic007G150100--Sobic001G048400 Sobic007G150100--Sobic001G504400 Sobic010G043800 Sobic010G043800 Sobic007G150100--Sobic010G043800 Sobic007G150100--Sobic009G056700 Sobic001G169900 Sobic001G169900 Sobic007G150100--Sobic001G169900 Sobic007G150100--Sobic003G398800 Sobic003G110800 Sobic003G110800 Sobic007G150100--Sobic003G110800 Sobic006G188000--Sobic010G245200 Sobic010G058200 Sobic010G058200 Sobic006G188000--Sobic010G058200 Sobic006G114900 Sobic006G114900 Sobic006G188000--Sobic006G114900 Sobic006G188000--Sobic002G370600 Sobic006G188000--Sobic003G431700 Sobic006G188000--Sobic007G053800 Sobic001G517700 Sobic001G517700 Sobic006G188000--Sobic001G517700 Sobic006G207800 Sobic006G207800 Sobic006G188000--Sobic006G207800 Sobic006G102000 Sobic006G102000 Sobic006G188000--Sobic006G102000 Sobic006G238200 Sobic006G238200 Sobic003G398800--Sobic006G238200 Sobic003G398800--Sobic003G306200 Sobic003G398800--Sobic009G056700 Sobic007G009200 Sobic007G009200 Sobic003G398800--Sobic007G009200 Sobic003G398800--Sobic007G103400 Sobic009G129300 Sobic009G129300 Sobic003G398800--Sobic009G129300 Sobic002G220900 Sobic002G220900 Sobic003G398800--Sobic002G220900 Sobic003G398800--Sobic003G431700 Sobic001G491000 Sobic001G491000 Sobic003G398800--Sobic001G491000 Sobic001G048400--Sobic003G398800 Sobic001G048400--Sobic009G056700 Sobic001G048400--Sobic007G103400 Sobic001G048400--Sobic003G431700 Sobic001G048400--Sobic010G043800 Sobic001G048400--Sobic001G504400 Sobic009G121000 Sobic009G121000 Sobic001G048400--Sobic009G121000 Sobic006G101500 Sobic006G101500 Sobic001G048400--Sobic006G101500 Sobic001G048400--Sobic006G238200 Sobic001G519800 Sobic001G519800 Sobic003G431700--Sobic001G519800 Sobic003G431700--Sobic003G398800 Sobic003G431700--Sobic006G207800 Sobic003G431700--Sobic002G370600 Sobic003G431700--Sobic006G238200 Sobic003G431700--Sobic004G308700 Sobic004G272100 Sobic004G272100 Sobic003G431700--Sobic004G272100 Sobic010G181300 Sobic010G181300 Sobic003G431700--Sobic010G181300 Sobic001G102800 Sobic001G102800 Sobic003G431700--Sobic001G102800 Sobic002G206300 Sobic002G206300 Sobic001G504400--Sobic002G206300 Sobic001G504400--Sobic007G103400 Sobic009G038701 Sobic009G038701 Sobic001G504400--Sobic009G038701 Sobic001G504400--Sobic003G185900 Sobic001G258200 Sobic001G258200 Sobic001G504400--Sobic001G258200 Sobic001G504400--Sobic010G125833 Sobic008G033000 Sobic008G033000 Sobic001G504400--Sobic008G033000 Sobic001G180200 Sobic001G180200 Sobic001G504400--Sobic001G180200 Sobic001G378100 Sobic001G378100 Sobic001G504400--Sobic001G378100
Octagon: transcription factors


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