Gene annotation
Transcriptome id Sobic.004G121400.2,Sobic.004G121400.3,Sobic.004G121400.1,Sobic.004G121400.4
Synonym CAX1-LIKE,CAX3, ATCAX3, ATHCX1, Sb04g010130, CAX3
Functional annotation CAX 1c (PubMedID : 22196357)
cation exchanger 3 (PubMedID : 26320239)
sodium/calcium exchanger protein, putative, expressed
UniProt C5XZN7 , A0A1Z5RM16 , A0A1Z5RMS7 , A0A1Z5RN24
Pfam PF01699
Panther DB PTHR31503 PTHR31503:SF13
NCBI CDD KOG1397; Ca2+/H+ antiporter VCX1 and related proteins
KEGG Orthology K07300; chaA, Ca2+:H+ antiporter
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G51860 : cation exchanger 4,cation exchanger 3
RAP-DB (Rice) LOC_Os02g21009.2 : sodium/calcium exchanger protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G398800 expressed protein -
2 Sobic.001G003200 RNApolymerase sigma-subunit F(PubMedID : 26465154)@RNA polymerase sigma factor, putative, expressed K03086: RNA polymerase primary sigma factor
3 Sobic.004G154200 expressed protein -
4 Sobic.001G048400 pheophorbide a oxygenase, chloroplast precursor, putative, expressed -
5 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
6 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
7 Sobic.009G056700 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed K01103: 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 3
8 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
9 Sobic.010G125833 - -
10 Sobic.008G104701 - -
11 Sobic.002G220900 expressed protein -
12 Sobic.010G231200 remorin C-terminal domain containing protein, putative, expressed -
13 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
14 Sobic.005G165500 OsSub17 - Putative Subtilisin homologue, expressed -
15 Sobic.005G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
16 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
17 Sobic.001G504400 expressed protein -
18 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
19 Sobic.003G097600 - -
20 Sobic.008G117000 expressed protein K13457: RPM1, disease resistance protein RPM1


Gene co-expression network
sample Sobic004G121400 Sobic004G121400 Sobic003G398800 Sobic003G398800 Sobic004G121400--Sobic003G398800 Sobic001G003200 Sobic001G003200 Sobic004G121400--Sobic001G003200 Sobic004G154200 Sobic004G154200 Sobic004G121400--Sobic004G154200 Sobic001G048400 Sobic001G048400 Sobic004G121400--Sobic001G048400 Sobic003G185900 Sobic003G185900 Sobic004G121400--Sobic003G185900 Sobic003G367500 Sobic003G367500 Sobic004G121400--Sobic003G367500 Sobic009G056700 Sobic009G056700 Sobic004G121400--Sobic009G056700 Sobic004G308700 Sobic004G308700 Sobic004G121400--Sobic004G308700 Sobic010G125833 Sobic010G125833 Sobic004G121400--Sobic010G125833 Sobic006G238200 Sobic006G238200 Sobic003G398800--Sobic006G238200 Sobic003G306200 Sobic003G306200 Sobic003G398800--Sobic003G306200 Sobic003G398800--Sobic009G056700 Sobic007G009200 Sobic007G009200 Sobic003G398800--Sobic007G009200 Sobic007G103400 Sobic007G103400 Sobic003G398800--Sobic007G103400 Sobic009G129300 Sobic009G129300 Sobic003G398800--Sobic009G129300 Sobic002G220900 Sobic002G220900 Sobic003G398800--Sobic002G220900 Sobic003G431700 Sobic003G431700 Sobic003G398800--Sobic003G431700 Sobic001G491000 Sobic001G491000 Sobic003G398800--Sobic001G491000 Sobic001G003200--Sobic009G056700 Sobic007G053800 Sobic007G053800 Sobic001G003200--Sobic007G053800 Sobic001G003200--Sobic004G121400 Sobic007G150100 Sobic007G150100 Sobic001G003200--Sobic007G150100 Sobic006G188000 Sobic006G188000 Sobic001G003200--Sobic006G188000 Sobic001G003200--Sobic003G398800 Sobic001G003200--Sobic001G048400 Sobic001G003200--Sobic003G431700 Sobic001G504400 Sobic001G504400 Sobic001G003200--Sobic001G504400 Sobic004G154200--Sobic003G367500 Sobic004G154200--Sobic003G185900 Sobic004G154200--Sobic003G398800 Sobic007G105500 Sobic007G105500 Sobic004G154200--Sobic007G105500 Sobic010G067100 Sobic010G067100 Sobic004G154200--Sobic010G067100 Sobic005G231500 Sobic005G231500 Sobic004G154200--Sobic005G231500 Sobic010G085100 Sobic010G085100 Sobic004G154200--Sobic010G085100 Sobic003G127800 Sobic003G127800 Sobic004G154200--Sobic003G127800 Sobic001G329400 Sobic001G329400 Sobic004G154200--Sobic001G329400 Sobic001G048400--Sobic003G398800 Sobic001G048400--Sobic009G056700 Sobic001G048400--Sobic007G103400 Sobic001G048400--Sobic003G431700 Sobic010G043800 Sobic010G043800 Sobic001G048400--Sobic010G043800 Sobic001G048400--Sobic001G504400 Sobic009G121000 Sobic009G121000 Sobic001G048400--Sobic009G121000 Sobic006G101500 Sobic006G101500 Sobic001G048400--Sobic006G101500 Sobic001G048400--Sobic006G238200 Sobic008G033000 Sobic008G033000 Sobic003G185900--Sobic008G033000 Sobic003G185900--Sobic001G504400 Sobic001G258200 Sobic001G258200 Sobic003G185900--Sobic001G258200 Sobic003G185900--Sobic010G067100 Sobic003G185900--Sobic007G105500 Sobic004G215800 Sobic004G215800 Sobic003G185900--Sobic004G215800 Sobic005G068700 Sobic005G068700 Sobic003G185900--Sobic005G068700 Sobic009G038701 Sobic009G038701 Sobic003G185900--Sobic009G038701 Sobic003G036200 Sobic003G036200 Sobic003G185900--Sobic003G036200 Sobic003G367500--Sobic004G215800 Sobic003G367500--Sobic007G105500 Sobic003G367500--Sobic003G398800 Sobic003G367500--Sobic004G154200 Sobic010G039500 Sobic010G039500 Sobic003G367500--Sobic010G039500 Sobic002G324500 Sobic002G324500 Sobic003G367500--Sobic002G324500 Sobic003G367500--Sobic003G127800 Sobic004G059800 Sobic004G059800 Sobic003G367500--Sobic004G059800 Sobic005G089600 Sobic005G089600 Sobic003G367500--Sobic005G089600 Sobic009G056700--Sobic003G398800 Sobic009G056700--Sobic003G431700 Sobic002G112400 Sobic002G112400 Sobic009G056700--Sobic002G112400 Sobic009G056700--Sobic007G103400 Sobic009G056700--Sobic003G306200 Sobic008G006100 Sobic008G006100 Sobic009G056700--Sobic008G006100 Sobic002G275300 Sobic002G275300 Sobic009G056700--Sobic002G275300 Sobic002G298800 Sobic002G298800 Sobic009G056700--Sobic002G298800 Sobic001G128600 Sobic001G128600 Sobic009G056700--Sobic001G128600 Sobic004G272100 Sobic004G272100 Sobic004G308700--Sobic004G272100 Sobic008G066100 Sobic008G066100 Sobic004G308700--Sobic008G066100 Sobic001G519800 Sobic001G519800 Sobic004G308700--Sobic001G519800 Sobic010G201700 Sobic010G201700 Sobic004G308700--Sobic010G201700 Sobic001G425400 Sobic001G425400 Sobic004G308700--Sobic001G425400 Sobic004G308700--Sobic003G431700 Sobic001G102800 Sobic001G102800 Sobic004G308700--Sobic001G102800 Sobic007G004800 Sobic007G004800 Sobic004G308700--Sobic007G004800 Sobic002G051100 Sobic002G051100 Sobic004G308700--Sobic002G051100 Sobic010G125833--Sobic009G038701 Sobic010G125833--Sobic001G504400 Sobic002G206300 Sobic002G206300 Sobic010G125833--Sobic002G206300 Sobic010G125833--Sobic008G033000 Sobic002G198300 Sobic002G198300 Sobic010G125833--Sobic002G198300 Sobic010G125833--Sobic003G185900 Sobic008G129900 Sobic008G129900 Sobic010G125833--Sobic008G129900 Sobic010G125833--Sobic002G298800 Sobic001G180200 Sobic001G180200 Sobic010G125833--Sobic001G180200
Octagon: transcription factors


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