Gene annotation
| Transcriptome id | Sobic.003G185900.4,Sobic.003G185900.3,Sobic.003G185900.1,Sobic.003G185900.2 |
|---|---|
| Synonym | Sb03g025100, TAP38, PPH1 |
| Functional annotation | protein phosphatase 2C, putative, expressed |
| UniProt | A0A1W0VY00 , A0A1B6Q460 , C5XN03 , A0A1W0VY10 |
| Pfam | PF13672 |
| Panther DB | PTHR13832 PTHR13832:SF218 |
| NCBI CDD | KOG0698; Serine/threonine protein phosphatase |
| KEGG Orthology | - |
| Gene Ontology | GO:0006470; protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity |
Orthologs (automatic annotation)
| TAIR | AT4G27800 : thylakoid-associated phosphatase 38 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g37130.1,LOC_Os01g37130.2 : protein phosphatase 2C, putative, expressed |
| MaizeGDB (Corn) | Zm00025a028801 |
| Brachypodium | PNT72186 , KQK08290 , KQK08289 |
| Barley | HORVU3Hr1G048950.13 , HORVU3Hr1G048950.12 , HORVU3Hr1G048950.11 , HORVU3Hr1G048950.10 , HORVU3Hr1G048950.14 , HORVU3Hr1G048950.3 , HORVU3Hr1G048950.2 , HORVU3Hr1G048950.1 , HORVU3Hr1G048950.7 , HORVU3Hr1G048950.6 , HORVU3Hr1G048950.5 , HORVU3Hr1G048950.4 , HORVU3Hr1G048950.9 , HORVU3Hr1G048950.8 |
| Wheat | TraesCS3A02G202700 , TraesCS3A02G202700 , TraesCS3A02G202700 , TraesCS3D02G206300 , TraesCS3D02G206300 , TraesCS3D02G206300 , TraesCS3B02G234200 |
| Populus | - |
JBrowse
| Sobic.003G185900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G033000 | CAAX amino terminal protease family protein, putative, expressed | K07052: uncharacterized protein |
| 2 | Sobic.001G504400 | expressed protein | - |
| 3 | Sobic.001G258200 | Ser/Thr protein phosphatase family protein, putative, expressed | - |
| 4 | Sobic.010G067100 | glutathione peroxidase, putative, expressed | K00432: gpx, btuE, glutathione peroxidase |
| 5 | Sobic.007G105500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed | - |
| 6 | Sobic.004G215800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed | K04354: serine/threonine-protein phosphatase 2A regulatory subunit B |
| 7 | Sobic.005G068700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed | K00858: ppnK, NAD+ kinase |
| 8 | Sobic.009G038701 | - | - |
| 9 | Sobic.003G036200 | NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 10 | Sobic.010G125833 | - | - |
| 11 | Sobic.009G256100 | expressed protein | - |
| 12 | Sobic.005G101200 | ELMO/CED-12 family protein, putative, expressed | - |
| 13 | Sobic.010G085100 | geminivirus Rep-interacting motor protein, putative, expressed | - |
| 14 | Sobic.004G189800 | ABC1 family domain containing protein, putative, expressed | - |
| 15 | Sobic.008G129900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 16 | Sobic.004G027600 | expressed protein | - |
| 17 | Sobic.003G398800 | expressed protein | - |
| 18 | Sobic.002G206300 | tsi1-interacting protein TSIP1, putative, expressed | - |
| 19 | Sobic.003G097600 | - | - |
| 20 | Sobic.001G217900 | PPR repeat domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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