Gene annotation
Transcriptome id Sobic.010G067100.1
Synonym GPX1, Sb10g005820, ATGPX1
Functional annotation glutathione peroxidase, putative, expressed
UniProt C5Z5U2
Pfam PF08534
Panther DB PTHR11592 PTHR11592:SF11
NCBI CDD KOG1651; Glutathione peroxidase
KEGG Orthology K00432; gpx, btuE, glutathione peroxidase
Gene Ontology GO:0016491; oxidoreductase activity GO:0006979response to oxidative stress GO:0004602glutathione peroxidase activity


Orthologs (automatic annotation)
TAIR AT2G25080 : glutathione peroxidase 1
RAP-DB (Rice) LOC_Os06g08670.1 : glutathione peroxidase, putative, expressed
MaizeGDB (Corn) Zm00025a042411
Brachypodium KQK19247
Barley HORVU7Hr1G030810.1 , HORVU7Hr1G030810.2 , HORVU7Hr1G030810.5 , HORVU7Hr1G030810.4 , HORVU7Hr1G030810.7 , HORVU7Hr1G030810.6
Wheat TraesCS7D02G152400 , TraesCS7B02G054400 , TraesCS7A02G150500 , TraesCS7A02G150500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G067100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
2 Sobic.001G504400 expressed protein -
3 Sobic.003G398800 expressed protein -
4 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
5 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
6 Sobic.006G158100 tRNA-dihydrouridine synthase, putative, expressed K05543: tRNA-dihydrouridine synthase 2
7 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
8 Sobic.009G038701 - -
9 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
10 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
11 Sobic.004G027600 expressed protein -
12 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
13 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
14 Sobic.004G154200 expressed protein -
15 Sobic.009G256100 expressed protein -
16 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
17 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
18 Sobic.007G136200 expressed protein -
19 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
20 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I


Gene co-expression network
sample Sobic010G067100 Sobic010G067100 Sobic003G185900 Sobic003G185900 Sobic010G067100--Sobic003G185900 Sobic001G504400 Sobic001G504400 Sobic010G067100--Sobic001G504400 Sobic003G398800 Sobic003G398800 Sobic010G067100--Sobic003G398800 Sobic001G258200 Sobic001G258200 Sobic010G067100--Sobic001G258200 Sobic007G105500 Sobic007G105500 Sobic010G067100--Sobic007G105500 Sobic006G158100 Sobic006G158100 Sobic010G067100--Sobic006G158100 Sobic002G206300 Sobic002G206300 Sobic010G067100--Sobic002G206300 Sobic009G038701 Sobic009G038701 Sobic010G067100--Sobic009G038701 Sobic008G033000 Sobic008G033000 Sobic010G067100--Sobic008G033000 Sobic003G185900--Sobic008G033000 Sobic003G185900--Sobic001G504400 Sobic003G185900--Sobic001G258200 Sobic003G185900--Sobic010G067100 Sobic003G185900--Sobic007G105500 Sobic004G215800 Sobic004G215800 Sobic003G185900--Sobic004G215800 Sobic005G068700 Sobic005G068700 Sobic003G185900--Sobic005G068700 Sobic003G185900--Sobic009G038701 Sobic003G036200 Sobic003G036200 Sobic003G185900--Sobic003G036200 Sobic001G504400--Sobic002G206300 Sobic007G103400 Sobic007G103400 Sobic001G504400--Sobic007G103400 Sobic001G504400--Sobic009G038701 Sobic001G504400--Sobic003G185900 Sobic001G504400--Sobic001G258200 Sobic010G125833 Sobic010G125833 Sobic001G504400--Sobic010G125833 Sobic001G504400--Sobic008G033000 Sobic001G180200 Sobic001G180200 Sobic001G504400--Sobic001G180200 Sobic001G378100 Sobic001G378100 Sobic001G504400--Sobic001G378100 Sobic006G238200 Sobic006G238200 Sobic003G398800--Sobic006G238200 Sobic003G306200 Sobic003G306200 Sobic003G398800--Sobic003G306200 Sobic009G056700 Sobic009G056700 Sobic003G398800--Sobic009G056700 Sobic007G009200 Sobic007G009200 Sobic003G398800--Sobic007G009200 Sobic003G398800--Sobic007G103400 Sobic009G129300 Sobic009G129300 Sobic003G398800--Sobic009G129300 Sobic002G220900 Sobic002G220900 Sobic003G398800--Sobic002G220900 Sobic003G431700 Sobic003G431700 Sobic003G398800--Sobic003G431700 Sobic001G491000 Sobic001G491000 Sobic003G398800--Sobic001G491000 Sobic001G258200--Sobic003G185900 Sobic002G382700 Sobic002G382700 Sobic001G258200--Sobic002G382700 Sobic008G129900 Sobic008G129900 Sobic001G258200--Sobic008G129900 Sobic001G258200--Sobic001G504400 Sobic004G189800 Sobic004G189800 Sobic001G258200--Sobic004G189800 Sobic001G258200--Sobic008G033000 Sobic001G258200--Sobic002G206300 Sobic001G359300 Sobic001G359300 Sobic001G258200--Sobic001G359300 Sobic001G258200--Sobic005G068700 Sobic007G105500--Sobic004G215800 Sobic007G105500--Sobic003G036200 Sobic002G404800 Sobic002G404800 Sobic007G105500--Sobic002G404800 Sobic007G105500--Sobic003G185900 Sobic003G367500 Sobic003G367500 Sobic007G105500--Sobic003G367500 Sobic005G101200 Sobic005G101200 Sobic007G105500--Sobic005G101200 Sobic009G256100 Sobic009G256100 Sobic007G105500--Sobic009G256100 Sobic007G105500--Sobic008G033000 Sobic010G085100 Sobic010G085100 Sobic007G105500--Sobic010G085100 Sobic007G136200 Sobic007G136200 Sobic006G158100--Sobic007G136200 Sobic001G017300 Sobic001G017300 Sobic006G158100--Sobic001G017300 Sobic006G158100--Sobic001G258200 Sobic006G158100--Sobic001G504400 Sobic003G094100 Sobic003G094100 Sobic006G158100--Sobic003G094100 Sobic010G043800 Sobic010G043800 Sobic006G158100--Sobic010G043800 Sobic006G158100--Sobic010G067100 Sobic001G169900 Sobic001G169900 Sobic006G158100--Sobic001G169900 Sobic006G158100--Sobic003G185900 Sobic002G206300--Sobic009G038701 Sobic002G206300--Sobic001G504400 Sobic002G206300--Sobic001G180200 Sobic001G536700 Sobic001G536700 Sobic002G206300--Sobic001G536700 Sobic009G207900 Sobic009G207900 Sobic002G206300--Sobic009G207900 Sobic002G206300--Sobic001G258200 Sobic002G206300--Sobic008G129900 Sobic001G217900 Sobic001G217900 Sobic002G206300--Sobic001G217900 Sobic003G341300 Sobic003G341300 Sobic002G206300--Sobic003G341300 Sobic009G038701--Sobic002G206300 Sobic009G038701--Sobic010G125833 Sobic009G038701--Sobic001G504400 Sobic009G038701--Sobic001G180200 Sobic009G038701--Sobic001G258200 Sobic009G038701--Sobic003G185900 Sobic009G038701--Sobic008G129900 Sobic009G038701--Sobic008G033000 Sobic009G038701--Sobic009G207900 Sobic008G033000--Sobic003G185900 Sobic008G033000--Sobic008G129900 Sobic008G033000--Sobic001G258200 Sobic008G033000--Sobic001G504400 Sobic008G033000--Sobic001G217900 Sobic008G033000--Sobic010G125833 Sobic008G033000--Sobic002G206300 Sobic008G033000--Sobic004G215800 Sobic008G033000--Sobic009G038701
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.