Gene annotation
Transcriptome id Sobic.004G027600.1
Synonym Sb04g002440
Functional annotation expressed protein
UniProt A0A1Z5RKM8
Pfam PF09353
Panther DB PTHR34051 PTHR34051:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48790 : Domain of unknown function (DUF1995)
RAP-DB (Rice) LOC_Os02g03670.1 : expressed protein
MaizeGDB (Corn) Zm00025a034980
Brachypodium KQJ93110
Barley HORVU6Hr1G015690.39 , HORVU6Hr1G015690.38 , HORVU6Hr1G015690.31 , HORVU6Hr1G015690.30 , HORVU6Hr1G015690.33 , HORVU6Hr1G015690.32 , HORVU6Hr1G015690.35 , HORVU6Hr1G015690.34 , HORVU6Hr1G015690.37 , HORVU6Hr1G015690.36 , HORVU6Hr1G015690.28 , HORVU6Hr1G015690.29 , HORVU6Hr1G015690.26 , HORVU6Hr1G015690.27 , HORVU6Hr1G015690.24 , HORVU6Hr1G015690.25 , HORVU6Hr1G015690.22 , HORVU6Hr1G015690.23
Wheat TraesCSU02G077900 , TraesCS6B02G116200 , TraesCS6A02G086000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
2 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
3 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -
4 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
5 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
6 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
7 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
8 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
9 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
10 Sobic.004G154200 expressed protein -
11 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
12 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.009G256100 expressed protein -
14 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
15 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
16 Sobic.004G059800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT1@3 - Na+ transporter, expressed -
17 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
18 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
19 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
20 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase


Gene co-expression network
sample Sobic004G027600 Sobic004G027600 Sobic004G189800 Sobic004G189800 Sobic004G027600--Sobic004G189800 Sobic003G185900 Sobic003G185900 Sobic004G027600--Sobic003G185900 Sobic010G251700 Sobic010G251700 Sobic004G027600--Sobic010G251700 Sobic004G112100 Sobic004G112100 Sobic004G027600--Sobic004G112100 Sobic009G237100 Sobic009G237100 Sobic004G027600--Sobic009G237100 Sobic010G067100 Sobic010G067100 Sobic004G027600--Sobic010G067100 Sobic010G085100 Sobic010G085100 Sobic004G027600--Sobic010G085100 Sobic001G258200 Sobic001G258200 Sobic004G027600--Sobic001G258200 Sobic005G101200 Sobic005G101200 Sobic004G027600--Sobic005G101200 Sobic004G189800--Sobic005G101200 Sobic004G189800--Sobic001G258200 Sobic004G189800--Sobic004G027600 Sobic009G256100 Sobic009G256100 Sobic004G189800--Sobic009G256100 Sobic004G189800--Sobic003G185900 Sobic005G068700 Sobic005G068700 Sobic004G189800--Sobic005G068700 Sobic002G404800 Sobic002G404800 Sobic004G189800--Sobic002G404800 Sobic002G382700 Sobic002G382700 Sobic004G189800--Sobic002G382700 Sobic008G033000 Sobic008G033000 Sobic004G189800--Sobic008G033000 Sobic003G185900--Sobic008G033000 Sobic001G504400 Sobic001G504400 Sobic003G185900--Sobic001G504400 Sobic003G185900--Sobic001G258200 Sobic003G185900--Sobic010G067100 Sobic007G105500 Sobic007G105500 Sobic003G185900--Sobic007G105500 Sobic004G215800 Sobic004G215800 Sobic003G185900--Sobic004G215800 Sobic003G185900--Sobic005G068700 Sobic009G038701 Sobic009G038701 Sobic003G185900--Sobic009G038701 Sobic003G036200 Sobic003G036200 Sobic003G185900--Sobic003G036200 Sobic010G251700--Sobic004G027600 Sobic005G231500 Sobic005G231500 Sobic010G251700--Sobic005G231500 Sobic010G251700--Sobic004G112100 Sobic004G356400 Sobic004G356400 Sobic010G251700--Sobic004G356400 Sobic001G446100 Sobic001G446100 Sobic010G251700--Sobic001G446100 Sobic010G251700--Sobic004G189800 Sobic003G021100 Sobic003G021100 Sobic010G251700--Sobic003G021100 Sobic001G329400 Sobic001G329400 Sobic010G251700--Sobic001G329400 Sobic007G142200 Sobic007G142200 Sobic010G251700--Sobic007G142200 Sobic006G153400 Sobic006G153400 Sobic004G112100--Sobic006G153400 Sobic009G048900 Sobic009G048900 Sobic004G112100--Sobic009G048900 Sobic010G104800 Sobic010G104800 Sobic004G112100--Sobic010G104800 Sobic004G112100--Sobic004G215800 Sobic004G112100--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G112100--Sobic003G097600 Sobic004G112100--Sobic002G404800 Sobic007G006400 Sobic007G006400 Sobic004G112100--Sobic007G006400 Sobic004G112100--Sobic004G027600 Sobic007G009200 Sobic007G009200 Sobic009G237100--Sobic007G009200 Sobic006G207800 Sobic006G207800 Sobic009G237100--Sobic006G207800 Sobic006G238200 Sobic006G238200 Sobic009G237100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic009G237100--Sobic001G100000 Sobic001G491000 Sobic001G491000 Sobic009G237100--Sobic001G491000 Sobic002G275300 Sobic002G275300 Sobic009G237100--Sobic002G275300 Sobic010G035400 Sobic010G035400 Sobic009G237100--Sobic010G035400 Sobic001G102800 Sobic001G102800 Sobic009G237100--Sobic001G102800 Sobic010G181300 Sobic010G181300 Sobic009G237100--Sobic010G181300 Sobic010G067100--Sobic003G185900 Sobic010G067100--Sobic001G504400 Sobic003G398800 Sobic003G398800 Sobic010G067100--Sobic003G398800 Sobic010G067100--Sobic001G258200 Sobic010G067100--Sobic007G105500 Sobic006G158100 Sobic006G158100 Sobic010G067100--Sobic006G158100 Sobic002G206300 Sobic002G206300 Sobic010G067100--Sobic002G206300 Sobic010G067100--Sobic009G038701 Sobic010G067100--Sobic008G033000 Sobic010G085100--Sobic005G101200 Sobic010G085100--Sobic003G185900 Sobic010G085100--Sobic007G105500 Sobic010G085100--Sobic002G404800 Sobic010G085100--Sobic004G215800 Sobic008G140200 Sobic008G140200 Sobic010G085100--Sobic008G140200 Sobic010G085100--Sobic003G036200 Sobic010G085100--Sobic008G033000 Sobic004G154200 Sobic004G154200 Sobic010G085100--Sobic004G154200 Sobic001G258200--Sobic003G185900 Sobic001G258200--Sobic002G382700 Sobic008G129900 Sobic008G129900 Sobic001G258200--Sobic008G129900 Sobic001G258200--Sobic001G504400 Sobic001G258200--Sobic004G189800 Sobic001G258200--Sobic008G033000 Sobic001G258200--Sobic002G206300 Sobic001G359300 Sobic001G359300 Sobic001G258200--Sobic001G359300 Sobic001G258200--Sobic005G068700 Sobic005G101200--Sobic004G189800 Sobic005G101200--Sobic005G068700 Sobic005G101200--Sobic002G404800 Sobic005G101200--Sobic001G258200 Sobic009G038900 Sobic009G038900 Sobic005G101200--Sobic009G038900 Sobic005G101200--Sobic007G105500 Sobic005G101200--Sobic003G185900 Sobic005G101200--Sobic010G085100 Sobic004G281800 Sobic004G281800 Sobic005G101200--Sobic004G281800
Octagon: transcription factors


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