Gene annotation
Transcriptome id Sobic.004G059800.1
Synonym ATHKT1, Sb04g005010, HKT1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsHKT1
3 - Na+ transporter, expressed
UniProt C5XW71
Pfam PF02386
Panther DB PTHR31064 PTHR31064:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008324; cation transmembrane transporter activity GO:0006812cation transport


Orthologs (automatic annotation)
TAIR AT4G10310 : high-affinity K+ transporter 1
RAP-DB (Rice) LOC_Os02g07830.1 : OsHKT1;3 - Na+ transporter, expressed
MaizeGDB (Corn) -
Brachypodium KQJ93589 , KQJ93588 , PNT66000 , PNT65999
Barley HORVU6Hr1G031360.1 , HORVU6Hr1G031360.3 , HORVU6Hr1G031360.2
Wheat TraesCS6D02G144500 , TraesCS6B02G182600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.009G256100 expressed protein -
3 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
4 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
5 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
6 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
7 Sobic.006G153400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, AFG1 family domain containing protein, expressed -
8 Sobic.010G039500 genetic modifier, putative, expressed -
9 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
10 Sobic.003G398800 expressed protein -
11 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
12 Sobic.009G038701 - -
13 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
14 Sobic.007G006400 - -
15 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
16 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.001G132600 histidine acid phosphatase, putative, expressed K13024: PPIP5K, inositol-hexakisphosphate/diphosphoinositol-pentakisphosphate 1-kinase
18 Sobic.004G082300 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.010G231200 remorin C-terminal domain containing protein, putative, expressed -
20 Sobic.003G097600 - -


Gene co-expression network
sample Sobic004G059800 Sobic004G059800 Sobic003G127800 Sobic003G127800 Sobic004G059800--Sobic003G127800 Sobic009G256100 Sobic009G256100 Sobic004G059800--Sobic009G256100 Sobic009G129300 Sobic009G129300 Sobic004G059800--Sobic009G129300 Sobic003G367500 Sobic003G367500 Sobic004G059800--Sobic003G367500 Sobic003G185900 Sobic003G185900 Sobic004G059800--Sobic003G185900 Sobic004G112100 Sobic004G112100 Sobic004G059800--Sobic004G112100 Sobic006G153400 Sobic006G153400 Sobic004G059800--Sobic006G153400 Sobic010G039500 Sobic010G039500 Sobic004G059800--Sobic010G039500 Sobic004G215800 Sobic004G215800 Sobic004G059800--Sobic004G215800 Sobic007G161500 Sobic007G161500 Sobic003G127800--Sobic007G161500 Sobic003G127800--Sobic004G059800 Sobic003G127800--Sobic010G039500 Sobic001G491000 Sobic001G491000 Sobic003G127800--Sobic001G491000 Sobic003G127800--Sobic009G129300 Sobic005G056400 Sobic005G056400 Sobic003G127800--Sobic005G056400 Sobic001G329400 Sobic001G329400 Sobic003G127800--Sobic001G329400 Sobic003G127800--Sobic003G367500 Sobic003G127800--Sobic006G153400 Sobic010G104800 Sobic010G104800 Sobic009G256100--Sobic010G104800 Sobic009G256100--Sobic006G153400 Sobic002G390100 Sobic002G390100 Sobic009G256100--Sobic002G390100 Sobic007G058100 Sobic007G058100 Sobic009G256100--Sobic007G058100 Sobic007G105500 Sobic007G105500 Sobic009G256100--Sobic007G105500 Sobic002G404800 Sobic002G404800 Sobic009G256100--Sobic002G404800 Sobic009G256100--Sobic003G185900 Sobic009G256100--Sobic004G215800 Sobic008G129900 Sobic008G129900 Sobic009G256100--Sobic008G129900 Sobic009G129300--Sobic001G491000 Sobic010G181300 Sobic010G181300 Sobic009G129300--Sobic010G181300 Sobic003G398800 Sobic003G398800 Sobic009G129300--Sobic003G398800 Sobic009G129300--Sobic003G127800 Sobic004G305800 Sobic004G305800 Sobic009G129300--Sobic004G305800 Sobic006G238200 Sobic006G238200 Sobic009G129300--Sobic006G238200 Sobic002G275300 Sobic002G275300 Sobic009G129300--Sobic002G275300 Sobic004G268000 Sobic004G268000 Sobic009G129300--Sobic004G268000 Sobic009G129300--Sobic007G161500 Sobic003G367500--Sobic004G215800 Sobic003G367500--Sobic007G105500 Sobic003G367500--Sobic003G398800 Sobic004G154200 Sobic004G154200 Sobic003G367500--Sobic004G154200 Sobic003G367500--Sobic010G039500 Sobic002G324500 Sobic002G324500 Sobic003G367500--Sobic002G324500 Sobic003G367500--Sobic003G127800 Sobic003G367500--Sobic004G059800 Sobic005G089600 Sobic005G089600 Sobic003G367500--Sobic005G089600 Sobic008G033000 Sobic008G033000 Sobic003G185900--Sobic008G033000 Sobic001G504400 Sobic001G504400 Sobic003G185900--Sobic001G504400 Sobic001G258200 Sobic001G258200 Sobic003G185900--Sobic001G258200 Sobic010G067100 Sobic010G067100 Sobic003G185900--Sobic010G067100 Sobic003G185900--Sobic007G105500 Sobic003G185900--Sobic004G215800 Sobic005G068700 Sobic005G068700 Sobic003G185900--Sobic005G068700 Sobic009G038701 Sobic009G038701 Sobic003G185900--Sobic009G038701 Sobic003G036200 Sobic003G036200 Sobic003G185900--Sobic003G036200 Sobic004G112100--Sobic006G153400 Sobic009G048900 Sobic009G048900 Sobic004G112100--Sobic009G048900 Sobic004G112100--Sobic010G104800 Sobic004G112100--Sobic004G215800 Sobic004G112100--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G112100--Sobic003G097600 Sobic004G112100--Sobic002G404800 Sobic007G006400 Sobic007G006400 Sobic004G112100--Sobic007G006400 Sobic004G027600 Sobic004G027600 Sobic004G112100--Sobic004G027600 Sobic006G153400--Sobic010G104800 Sobic006G153400--Sobic009G256100 Sobic006G153400--Sobic007G006400 Sobic006G153400--Sobic004G112100 Sobic006G153400--Sobic003G127800 Sobic001G244600 Sobic001G244600 Sobic006G153400--Sobic001G244600 Sobic004G082300 Sobic004G082300 Sobic006G153400--Sobic004G082300 Sobic006G153400--Sobic004G059800 Sobic005G101200 Sobic005G101200 Sobic006G153400--Sobic005G101200 Sobic010G039500--Sobic003G127800 Sobic003G005000 Sobic003G005000 Sobic010G039500--Sobic003G005000 Sobic010G039500--Sobic003G367500 Sobic010G039500--Sobic003G398800 Sobic005G101300 Sobic005G101300 Sobic010G039500--Sobic005G101300 Sobic003G024300 Sobic003G024300 Sobic010G039500--Sobic003G024300 Sobic010G039500--Sobic007G161500 Sobic010G039500--Sobic001G491000 Sobic010G039500--Sobic006G238200 Sobic004G215800--Sobic007G105500 Sobic004G215800--Sobic003G036200 Sobic004G215800--Sobic003G185900 Sobic004G215800--Sobic003G367500 Sobic004G215800--Sobic002G404800 Sobic004G215800--Sobic008G033000 Sobic004G215800--Sobic009G256100 Sobic004G215800--Sobic003G097600 Sobic004G215800--Sobic004G112100
Octagon: transcription factors


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